Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03070

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03065 and AO356_03070 are separated by 163 nucleotidesAO356_03070 and AO356_03075 overlap by 17 nucleotidesAO356_03075 and AO356_03080 overlap by 4 nucleotides AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378 _03065 AO356_03070: AO356_03070 - histidine kinase, at 686,542 to 688,863 _03070 AO356_03075: AO356_03075 - MarR family transcriptional regulator, at 688,847 to 689,308 _03075 AO356_03080: AO356_03080 - glutathione peroxidase, at 689,305 to 689,790 _03080 Position (kb) 686 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 685.697 kb on - strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 686.236 kb on + strand, within AO356_03065at 686.404 kb on + strandat 686.404 kb on + strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.450 kb on + strandat 686.450 kb on + strandat 686.451 kb on - strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.500 kb on - strandat 686.500 kb on - strandat 686.524 kb on + strandat 686.524 kb on + strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.573 kb on - strandat 686.574 kb on + strandat 686.575 kb on - strandat 686.575 kb on - strandat 686.651 kb on - strandat 686.651 kb on - strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.823 kb on + strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.923 kb on + strand, within AO356_03070at 686.924 kb on - strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.988 kb on + strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 687.989 kb on - strand, within AO356_03070at 688.161 kb on - strand, within AO356_03070at 688.161 kb on - strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.195 kb on + strand, within AO356_03070at 688.196 kb on - strand, within AO356_03070at 688.321 kb on + strand, within AO356_03070at 688.322 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.371 kb on - strand, within AO356_03070at 688.786 kb on + strandat 688.787 kb on - strandat 688.787 kb on - strandat 688.787 kb on - strandat 688.848 kb on + strandat 688.849 kb on - strandat 688.849 kb on - strandat 688.849 kb on - strandat 689.178 kb on + strand, within AO356_03075at 689.178 kb on + strand, within AO356_03075at 689.179 kb on - strand, within AO356_03075at 689.187 kb on + strand, within AO356_03075at 689.187 kb on + strand, within AO356_03075at 689.220 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.250 kb on + strand, within AO356_03075at 689.251 kb on - strand, within AO356_03075at 689.458 kb on - strand, within AO356_03080at 689.458 kb on - strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.633 kb on + strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.634 kb on - strand, within AO356_03080at 689.663 kb on + strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.664 kb on - strand, within AO356_03080at 689.805 kb on + strandat 689.805 kb on + strandat 689.805 kb on + strandat 689.806 kb on - strandat 689.853 kb on - strandat 689.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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685,697 - AO356_03065 0.23 -0.7
685,843 + AO356_03065 0.40 +1.5
685,843 + AO356_03065 0.40 +0.9
685,843 + AO356_03065 0.40 +0.9
685,843 + AO356_03065 0.40 +1.8
685,844 - AO356_03065 0.40 +1.2
685,844 - AO356_03065 0.40 +0.9
685,844 - AO356_03065 0.40 +1.1
685,844 - AO356_03065 0.40 +0.8
686,236 + AO356_03065 0.84 +0.6
686,404 + +1.6
686,404 + +2.3
686,405 - -1.1
686,405 - -2.5
686,405 - -0.7
686,405 - -0.7
686,405 - -0.9
686,405 - -3.4
686,405 - -0.4
686,450 + +2.1
686,450 + +1.1
686,451 - -0.0
686,462 + +1.1
686,462 + +1.3
686,462 + +0.4
686,462 + +1.5
686,462 + +2.0
686,462 + +1.8
686,462 + +1.1
686,462 + +1.0
686,462 + +1.1
686,463 - -0.5
686,463 - -0.2
686,463 - -1.1
686,463 - -0.7
686,463 - -0.4
686,499 + +1.2
686,499 + +1.0
686,499 + +2.1
686,499 + +1.1
686,499 + +0.9
686,500 - -2.0
686,500 - -0.8
686,524 + +1.9
686,524 + +1.8
686,525 - -1.7
686,525 - +0.9
686,525 - -0.7
686,572 + -0.9
686,572 + -2.7
686,572 + -0.0
686,573 - -1.5
686,574 + -0.3
686,575 - -2.5
686,575 - -1.4
686,651 - -1.4
686,651 - -0.6
686,731 + +0.1
686,731 + -1.0
686,731 + -1.5
686,731 + -0.9
686,731 + -2.2
686,732 - -2.3
686,732 - -1.6
686,732 - -1.4
686,823 + AO356_03070 0.12 -2.0
686,824 - AO356_03070 0.12 -1.1
686,824 - AO356_03070 0.12 -2.0
686,923 + AO356_03070 0.16 -0.6
686,924 - AO356_03070 0.16 -0.3
686,980 + AO356_03070 0.19 -0.2
686,980 + AO356_03070 0.19 -1.9
686,980 + AO356_03070 0.19 -2.7
686,980 + AO356_03070 0.19 -1.6
686,981 - AO356_03070 0.19 -0.4
686,981 - AO356_03070 0.19 -1.4
686,981 - AO356_03070 0.19 -0.9
687,079 + AO356_03070 0.23 -1.1
687,079 + AO356_03070 0.23 -2.3
687,080 - AO356_03070 0.23 -3.6
687,080 - AO356_03070 0.23 -1.0
687,080 - AO356_03070 0.23 -1.1
687,080 - AO356_03070 0.23 -0.4
687,235 - AO356_03070 0.30 -2.7
687,235 - AO356_03070 0.30 +0.1
687,286 + AO356_03070 0.32 -2.3
687,286 + AO356_03070 0.32 -1.0
687,988 + AO356_03070 0.62 -2.3
687,988 + AO356_03070 0.62 -0.9
687,988 + AO356_03070 0.62 +0.5
687,988 + AO356_03070 0.62 -0.6
687,988 + AO356_03070 0.62 -0.8
687,988 + AO356_03070 0.62 +0.1
687,988 + AO356_03070 0.62 -2.3
687,988 + AO356_03070 0.62 -1.3
687,989 - AO356_03070 0.62 -1.0
687,989 - AO356_03070 0.62 -1.9
687,989 - AO356_03070 0.62 -1.8
687,989 - AO356_03070 0.62 +0.3
687,989 - AO356_03070 0.62 -1.3
687,989 - AO356_03070 0.62 -0.9
687,989 - AO356_03070 0.62 -0.9
688,161 - AO356_03070 0.70 -0.3
688,161 - AO356_03070 0.70 -1.1
688,195 + AO356_03070 0.71 -2.4
688,195 + AO356_03070 0.71 -1.1
688,195 + AO356_03070 0.71 -2.5
688,196 - AO356_03070 0.71 -1.3
688,321 + AO356_03070 0.77 -1.0
688,322 - AO356_03070 0.77 -1.3
688,371 - AO356_03070 0.79 -3.5
688,371 - AO356_03070 0.79 -0.5
688,371 - AO356_03070 0.79 -1.4
688,371 - AO356_03070 0.79 -0.9
688,786 + -0.5
688,787 - -0.4
688,787 - -0.7
688,787 - -1.1
688,848 + +0.5
688,849 - -0.5
688,849 - -0.3
688,849 - -1.3
689,178 + AO356_03075 0.72 -0.5
689,178 + AO356_03075 0.72 +1.1
689,179 - AO356_03075 0.72 -1.1
689,187 + AO356_03075 0.74 +0.1
689,187 + AO356_03075 0.74 +1.6
689,220 + AO356_03075 0.81 +0.6
689,250 + AO356_03075 0.87 +0.2
689,250 + AO356_03075 0.87 -1.2
689,250 + AO356_03075 0.87 +0.8
689,251 - AO356_03075 0.87 +1.2
689,458 - AO356_03080 0.31 +0.2
689,458 - AO356_03080 0.31 +0.5
689,633 + AO356_03080 0.67 -0.2
689,633 + AO356_03080 0.67 -0.4
689,633 + AO356_03080 0.67 -0.0
689,633 + AO356_03080 0.67 +0.1
689,633 + AO356_03080 0.67 -0.1
689,634 - AO356_03080 0.68 +1.1
689,634 - AO356_03080 0.68 +0.6
689,634 - AO356_03080 0.68 +0.6
689,634 - AO356_03080 0.68 +0.4
689,663 + AO356_03080 0.74 +0.8
689,664 - AO356_03080 0.74 +0.3
689,664 - AO356_03080 0.74 +0.5
689,664 - AO356_03080 0.74 -1.1
689,664 - AO356_03080 0.74 -0.4
689,805 + +0.2
689,805 + -0.2
689,805 + +1.5
689,806 - +0.2
689,853 - +0.4
689,855 + -0.1

Or see this region's nucleotide sequence