Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3060

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3059 and Dshi_3060 are separated by 78 nucleotidesDshi_3060 and Dshi_3061 are separated by 151 nucleotidesDshi_3061 and Dshi_3062 overlap by 4 nucleotides Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926 _3059 Dshi_3060: Dshi_3060 - hypothetical protein (RefSeq), at 3,230,005 to 3,230,340 _3060 Dshi_3061: Dshi_3061 - hypothetical protein (RefSeq), at 3,230,492 to 3,230,662 _3061 Dshi_3062: Dshi_3062 - argininosuccinate lyase (RefSeq), at 3,230,659 to 3,232,050 _3062 Position (kb) 3230 3231Strain fitness (log2 ratio) -1 0 1at 3230.181 kb on + strand, within Dshi_3060at 3230.316 kb on + strandat 3230.324 kb on - strandat 3230.478 kb on + strandat 3231.138 kb on - strand, within Dshi_3062at 3231.212 kb on + strand, within Dshi_3062

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,230,181 + Dshi_3060 0.52 +0.7
3,230,316 + +0.5
3,230,324 - -0.5
3,230,478 + -1.3
3,231,138 - Dshi_3062 0.34 +0.2
3,231,212 + Dshi_3062 0.40 -0.1

Or see this region's nucleotide sequence