Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2162

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2161 and Dshi_2162 are separated by 367 nucleotidesDshi_2162 and Dshi_2163 overlap by 8 nucleotides Dshi_2161: Dshi_2161 - serine O-acetyltransferase (RefSeq), at 2,290,509 to 2,291,318 _2161 Dshi_2162: Dshi_2162 - hypothetical protein (RefSeq), at 2,291,686 to 2,292,393 _2162 Dshi_2163: Dshi_2163 - hypothetical protein (RefSeq), at 2,292,386 to 2,296,303 _2163 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -1 0 1 2at 2291.410 kb on + strandat 2291.456 kb on - strandat 2291.483 kb on + strandat 2291.547 kb on - strandat 2291.547 kb on - strandat 2291.635 kb on + strandat 2291.638 kb on - strandat 2291.643 kb on - strandat 2291.665 kb on + strandat 2291.665 kb on + strandat 2291.673 kb on - strandat 2291.673 kb on - strandat 2291.689 kb on + strandat 2291.773 kb on - strand, within Dshi_2162at 2291.887 kb on - strand, within Dshi_2162at 2291.897 kb on - strand, within Dshi_2162at 2291.919 kb on + strand, within Dshi_2162at 2291.942 kb on - strand, within Dshi_2162at 2291.948 kb on + strand, within Dshi_2162at 2291.971 kb on - strand, within Dshi_2162at 2291.971 kb on - strand, within Dshi_2162at 2291.980 kb on + strand, within Dshi_2162at 2291.988 kb on - strand, within Dshi_2162at 2291.988 kb on - strand, within Dshi_2162at 2291.990 kb on - strand, within Dshi_2162at 2291.998 kb on - strand, within Dshi_2162at 2292.059 kb on - strand, within Dshi_2162at 2292.224 kb on + strand, within Dshi_2162at 2292.232 kb on - strand, within Dshi_2162at 2292.263 kb on + strand, within Dshi_2162at 2292.456 kb on - strandat 2292.491 kb on - strandat 2292.498 kb on + strandat 2292.498 kb on - strandat 2292.521 kb on - strandat 2292.531 kb on - strandat 2292.550 kb on - strandat 2292.570 kb on + strandat 2292.743 kb on + strandat 2292.767 kb on - strandat 2292.772 kb on + strandat 2292.791 kb on - strand, within Dshi_2163at 2292.890 kb on + strand, within Dshi_2163at 2292.897 kb on - strand, within Dshi_2163at 2292.963 kb on - strand, within Dshi_2163at 2293.028 kb on + strand, within Dshi_2163at 2293.159 kb on - strand, within Dshi_2163at 2293.211 kb on - strand, within Dshi_2163at 2293.221 kb on - strand, within Dshi_2163at 2293.221 kb on - strand, within Dshi_2163at 2293.227 kb on + strand, within Dshi_2163at 2293.227 kb on + strand, within Dshi_2163at 2293.294 kb on + strand, within Dshi_2163at 2293.354 kb on + strand, within Dshi_2163

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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2,291,410 + +0.2
2,291,456 - -0.0
2,291,483 + +0.5
2,291,547 - +0.1
2,291,547 - +0.4
2,291,635 + +0.0
2,291,638 - -1.1
2,291,643 - +0.3
2,291,665 + -0.1
2,291,665 + +0.7
2,291,673 - -0.1
2,291,673 - -0.4
2,291,689 + +0.2
2,291,773 - Dshi_2162 0.12 -0.4
2,291,887 - Dshi_2162 0.28 -0.1
2,291,897 - Dshi_2162 0.30 +0.2
2,291,919 + Dshi_2162 0.33 +0.2
2,291,942 - Dshi_2162 0.36 +1.3
2,291,948 + Dshi_2162 0.37 -0.2
2,291,971 - Dshi_2162 0.40 +0.5
2,291,971 - Dshi_2162 0.40 +0.2
2,291,980 + Dshi_2162 0.42 -0.6
2,291,988 - Dshi_2162 0.43 +0.7
2,291,988 - Dshi_2162 0.43 +0.3
2,291,990 - Dshi_2162 0.43 +2.1
2,291,998 - Dshi_2162 0.44 +0.5
2,292,059 - Dshi_2162 0.53 -0.1
2,292,224 + Dshi_2162 0.76 -0.2
2,292,232 - Dshi_2162 0.77 -1.4
2,292,263 + Dshi_2162 0.81 -0.4
2,292,456 - -0.4
2,292,491 - +1.1
2,292,498 + -0.1
2,292,498 - +0.7
2,292,521 - +0.1
2,292,531 - +0.0
2,292,550 - -1.5
2,292,570 + -1.2
2,292,743 + -0.2
2,292,767 - +0.1
2,292,772 + +0.1
2,292,791 - Dshi_2163 0.10 -0.5
2,292,890 + Dshi_2163 0.13 +0.1
2,292,897 - Dshi_2163 0.13 -0.2
2,292,963 - Dshi_2163 0.15 -0.3
2,293,028 + Dshi_2163 0.16 -0.3
2,293,159 - Dshi_2163 0.20 +0.6
2,293,211 - Dshi_2163 0.21 +0.7
2,293,221 - Dshi_2163 0.21 -0.3
2,293,221 - Dshi_2163 0.21 -0.6
2,293,227 + Dshi_2163 0.21 +0.6
2,293,227 + Dshi_2163 0.21 +0.8
2,293,294 + Dshi_2163 0.23 +0.3
2,293,354 + Dshi_2163 0.25 +0.2

Or see this region's nucleotide sequence