Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2159

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2158 and Dshi_2159 are separated by 12 nucleotidesDshi_2159 and Dshi_2160 are separated by 13 nucleotides Dshi_2158: Dshi_2158 - Pyruvate dehydrogenase (acetyl-transferring) (RefSeq), at 2,286,855 to 2,287,850 _2158 Dshi_2159: Dshi_2159 - Transketolase central region (RefSeq), at 2,287,863 to 2,289,218 _2159 Dshi_2160: Dshi_2160 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 2,289,232 to 2,290,494 _2160 Position (kb) 2287 2288 2289 2290Strain fitness (log2 ratio) -2 -1 0 1at 2286.962 kb on + strand, within Dshi_2158at 2286.962 kb on + strand, within Dshi_2158at 2286.973 kb on - strand, within Dshi_2158at 2286.988 kb on - strand, within Dshi_2158at 2287.006 kb on - strand, within Dshi_2158at 2287.006 kb on - strand, within Dshi_2158at 2287.044 kb on + strand, within Dshi_2158at 2287.246 kb on - strand, within Dshi_2158at 2287.254 kb on + strand, within Dshi_2158at 2287.274 kb on + strand, within Dshi_2158at 2287.287 kb on - strand, within Dshi_2158at 2287.337 kb on + strand, within Dshi_2158at 2287.372 kb on - strand, within Dshi_2158at 2287.438 kb on - strand, within Dshi_2158at 2287.469 kb on + strand, within Dshi_2158at 2287.486 kb on + strand, within Dshi_2158at 2287.560 kb on + strand, within Dshi_2158at 2287.806 kb on - strandat 2287.845 kb on + strandat 2287.896 kb on - strandat 2287.908 kb on - strandat 2287.964 kb on + strandat 2288.075 kb on - strand, within Dshi_2159at 2288.251 kb on - strand, within Dshi_2159at 2288.422 kb on + strand, within Dshi_2159at 2288.459 kb on + strand, within Dshi_2159at 2288.625 kb on + strand, within Dshi_2159at 2288.678 kb on + strand, within Dshi_2159at 2288.798 kb on + strand, within Dshi_2159at 2288.798 kb on + strand, within Dshi_2159at 2289.025 kb on + strand, within Dshi_2159at 2289.185 kb on + strandat 2289.185 kb on + strandat 2289.200 kb on + strandat 2289.224 kb on + strandat 2289.294 kb on + strandat 2289.382 kb on + strand, within Dshi_2160at 2289.542 kb on + strand, within Dshi_2160at 2289.631 kb on + strand, within Dshi_2160at 2289.631 kb on + strand, within Dshi_2160at 2289.631 kb on + strand, within Dshi_2160at 2289.747 kb on - strand, within Dshi_2160at 2289.802 kb on - strand, within Dshi_2160at 2289.981 kb on + strand, within Dshi_2160at 2290.023 kb on - strand, within Dshi_2160at 2290.024 kb on - strand, within Dshi_2160at 2290.032 kb on + strand, within Dshi_2160at 2290.042 kb on - strand, within Dshi_2160at 2290.054 kb on - strand, within Dshi_2160at 2290.054 kb on - strand, within Dshi_2160at 2290.128 kb on + strand, within Dshi_2160at 2290.197 kb on - strand, within Dshi_2160at 2290.216 kb on - strand, within Dshi_2160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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2,286,962 + Dshi_2158 0.11 -0.1
2,286,962 + Dshi_2158 0.11 -0.5
2,286,973 - Dshi_2158 0.12 -1.2
2,286,988 - Dshi_2158 0.13 -0.2
2,287,006 - Dshi_2158 0.15 -0.5
2,287,006 - Dshi_2158 0.15 +0.2
2,287,044 + Dshi_2158 0.19 -1.0
2,287,246 - Dshi_2158 0.39 -0.6
2,287,254 + Dshi_2158 0.40 -1.5
2,287,274 + Dshi_2158 0.42 +0.9
2,287,287 - Dshi_2158 0.43 -0.3
2,287,337 + Dshi_2158 0.48 -0.7
2,287,372 - Dshi_2158 0.52 -1.7
2,287,438 - Dshi_2158 0.59 -0.7
2,287,469 + Dshi_2158 0.62 -0.4
2,287,486 + Dshi_2158 0.63 -0.4
2,287,560 + Dshi_2158 0.71 -1.5
2,287,806 - +1.1
2,287,845 + +0.1
2,287,896 - -0.3
2,287,908 - -0.6
2,287,964 + -0.2
2,288,075 - Dshi_2159 0.16 +0.5
2,288,251 - Dshi_2159 0.29 -0.2
2,288,422 + Dshi_2159 0.41 -0.5
2,288,459 + Dshi_2159 0.44 -0.9
2,288,625 + Dshi_2159 0.56 -0.4
2,288,678 + Dshi_2159 0.60 -0.9
2,288,798 + Dshi_2159 0.69 +1.1
2,288,798 + Dshi_2159 0.69 -0.1
2,289,025 + Dshi_2159 0.86 -2.1
2,289,185 + +0.3
2,289,185 + -0.1
2,289,200 + -0.6
2,289,224 + -0.5
2,289,294 + -0.0
2,289,382 + Dshi_2160 0.12 +0.9
2,289,542 + Dshi_2160 0.25 +0.4
2,289,631 + Dshi_2160 0.32 -0.2
2,289,631 + Dshi_2160 0.32 -2.3
2,289,631 + Dshi_2160 0.32 -0.4
2,289,747 - Dshi_2160 0.41 -0.6
2,289,802 - Dshi_2160 0.45 -0.1
2,289,981 + Dshi_2160 0.59 -0.4
2,290,023 - Dshi_2160 0.63 -0.4
2,290,024 - Dshi_2160 0.63 -0.9
2,290,032 + Dshi_2160 0.63 +0.1
2,290,042 - Dshi_2160 0.64 -0.3
2,290,054 - Dshi_2160 0.65 -0.4
2,290,054 - Dshi_2160 0.65 +0.2
2,290,128 + Dshi_2160 0.71 +0.3
2,290,197 - Dshi_2160 0.76 +0.1
2,290,216 - Dshi_2160 0.78 +0.0

Or see this region's nucleotide sequence