Experiment: m.b. Aluminum chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2158 and Dshi_2159 are separated by 12 nucleotides Dshi_2159 and Dshi_2160 are separated by 13 nucleotides
Dshi_2158: Dshi_2158 - Pyruvate dehydrogenase (acetyl-transferring) (RefSeq), at 2,286,855 to 2,287,850
_2158
Dshi_2159: Dshi_2159 - Transketolase central region (RefSeq), at 2,287,863 to 2,289,218
_2159
Dshi_2160: Dshi_2160 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 2,289,232 to 2,290,494
_2160
Position (kb)
2287
2288
2289
2290 Strain fitness (log2 ratio)
-2
-1
0
1 at 2286.962 kb on + strand, within Dshi_2158 at 2286.962 kb on + strand, within Dshi_2158 at 2286.973 kb on - strand, within Dshi_2158 at 2286.988 kb on - strand, within Dshi_2158 at 2287.006 kb on - strand, within Dshi_2158 at 2287.006 kb on - strand, within Dshi_2158 at 2287.044 kb on + strand, within Dshi_2158 at 2287.246 kb on - strand, within Dshi_2158 at 2287.254 kb on + strand, within Dshi_2158 at 2287.274 kb on + strand, within Dshi_2158 at 2287.287 kb on - strand, within Dshi_2158 at 2287.337 kb on + strand, within Dshi_2158 at 2287.372 kb on - strand, within Dshi_2158 at 2287.438 kb on - strand, within Dshi_2158 at 2287.469 kb on + strand, within Dshi_2158 at 2287.486 kb on + strand, within Dshi_2158 at 2287.560 kb on + strand, within Dshi_2158 at 2287.806 kb on - strand at 2287.845 kb on + strand at 2287.896 kb on - strand at 2287.908 kb on - strand at 2287.964 kb on + strand at 2288.075 kb on - strand, within Dshi_2159 at 2288.251 kb on - strand, within Dshi_2159 at 2288.422 kb on + strand, within Dshi_2159 at 2288.459 kb on + strand, within Dshi_2159 at 2288.625 kb on + strand, within Dshi_2159 at 2288.678 kb on + strand, within Dshi_2159 at 2288.798 kb on + strand, within Dshi_2159 at 2288.798 kb on + strand, within Dshi_2159 at 2289.025 kb on + strand, within Dshi_2159 at 2289.185 kb on + strand at 2289.185 kb on + strand at 2289.200 kb on + strand at 2289.224 kb on + strand at 2289.294 kb on + strand at 2289.382 kb on + strand, within Dshi_2160 at 2289.542 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.631 kb on + strand, within Dshi_2160 at 2289.747 kb on - strand, within Dshi_2160 at 2289.802 kb on - strand, within Dshi_2160 at 2289.981 kb on + strand, within Dshi_2160 at 2290.023 kb on - strand, within Dshi_2160 at 2290.024 kb on - strand, within Dshi_2160 at 2290.032 kb on + strand, within Dshi_2160 at 2290.042 kb on - strand, within Dshi_2160 at 2290.054 kb on - strand, within Dshi_2160 at 2290.054 kb on - strand, within Dshi_2160 at 2290.128 kb on + strand, within Dshi_2160 at 2290.197 kb on - strand, within Dshi_2160 at 2290.216 kb on - strand, within Dshi_2160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM remove 2,286,962 + Dshi_2158 0.11 -0.1 2,286,962 + Dshi_2158 0.11 -0.5 2,286,973 - Dshi_2158 0.12 -1.2 2,286,988 - Dshi_2158 0.13 -0.2 2,287,006 - Dshi_2158 0.15 -0.5 2,287,006 - Dshi_2158 0.15 +0.2 2,287,044 + Dshi_2158 0.19 -1.0 2,287,246 - Dshi_2158 0.39 -0.6 2,287,254 + Dshi_2158 0.40 -1.5 2,287,274 + Dshi_2158 0.42 +0.9 2,287,287 - Dshi_2158 0.43 -0.3 2,287,337 + Dshi_2158 0.48 -0.7 2,287,372 - Dshi_2158 0.52 -1.7 2,287,438 - Dshi_2158 0.59 -0.7 2,287,469 + Dshi_2158 0.62 -0.4 2,287,486 + Dshi_2158 0.63 -0.4 2,287,560 + Dshi_2158 0.71 -1.5 2,287,806 - +1.1 2,287,845 + +0.1 2,287,896 - -0.3 2,287,908 - -0.6 2,287,964 + -0.2 2,288,075 - Dshi_2159 0.16 +0.5 2,288,251 - Dshi_2159 0.29 -0.2 2,288,422 + Dshi_2159 0.41 -0.5 2,288,459 + Dshi_2159 0.44 -0.9 2,288,625 + Dshi_2159 0.56 -0.4 2,288,678 + Dshi_2159 0.60 -0.9 2,288,798 + Dshi_2159 0.69 +1.1 2,288,798 + Dshi_2159 0.69 -0.1 2,289,025 + Dshi_2159 0.86 -2.1 2,289,185 + +0.3 2,289,185 + -0.1 2,289,200 + -0.6 2,289,224 + -0.5 2,289,294 + -0.0 2,289,382 + Dshi_2160 0.12 +0.9 2,289,542 + Dshi_2160 0.25 +0.4 2,289,631 + Dshi_2160 0.32 -0.2 2,289,631 + Dshi_2160 0.32 -2.3 2,289,631 + Dshi_2160 0.32 -0.4 2,289,747 - Dshi_2160 0.41 -0.6 2,289,802 - Dshi_2160 0.45 -0.1 2,289,981 + Dshi_2160 0.59 -0.4 2,290,023 - Dshi_2160 0.63 -0.4 2,290,024 - Dshi_2160 0.63 -0.9 2,290,032 + Dshi_2160 0.63 +0.1 2,290,042 - Dshi_2160 0.64 -0.3 2,290,054 - Dshi_2160 0.65 -0.4 2,290,054 - Dshi_2160 0.65 +0.2 2,290,128 + Dshi_2160 0.71 +0.3 2,290,197 - Dshi_2160 0.76 +0.1 2,290,216 - Dshi_2160 0.78 +0.0
Or see this region's nucleotide sequence