Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04900

Experiment: Formate with Nitrofurantoin 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04895 and MMP_RS04900 are separated by 88 nucleotidesMMP_RS04900 and MMP_RS04905 are separated by 44 nucleotides MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311 _RS04895 MMP_RS04900: MMP_RS04900 - hypothetical protein, at 931,400 to 933,241 _RS04900 MMP_RS04905: MMP_RS04905 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 933,286 to 934,695 _RS04905 Position (kb) 931 932 933 934Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 930.466 kb on - strand, within MMP_RS04895at 930.532 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.586 kb on + strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.617 kb on + strand, within MMP_RS04895at 930.648 kb on - strand, within MMP_RS04895at 930.694 kb on - strand, within MMP_RS04895at 930.705 kb on - strand, within MMP_RS04895at 930.724 kb on - strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.743 kb on - strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.766 kb on + strand, within MMP_RS04895at 930.788 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.882 kb on - strand, within MMP_RS04895at 930.921 kb on - strand, within MMP_RS04895at 930.970 kb on - strand, within MMP_RS04895at 931.000 kb on - strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.002 kb on - strand, within MMP_RS04895at 931.004 kb on - strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.019 kb on + strand, within MMP_RS04895at 931.057 kb on - strand, within MMP_RS04895at 931.084 kb on - strand, within MMP_RS04895at 931.099 kb on - strand, within MMP_RS04895at 931.125 kb on - strand, within MMP_RS04895at 931.133 kb on + strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.218 kb on - strandat 931.218 kb on - strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.221 kb on - strandat 931.221 kb on - strandat 931.222 kb on + strandat 931.242 kb on - strandat 931.249 kb on + strandat 931.249 kb on + strandat 931.285 kb on - strandat 931.293 kb on - strandat 931.294 kb on + strandat 931.333 kb on - strandat 931.343 kb on - strandat 931.344 kb on + strandat 931.344 kb on + strandat 931.345 kb on - strandat 931.346 kb on + strandat 931.351 kb on - strandat 931.352 kb on + strandat 931.362 kb on - strandat 931.362 kb on - strandat 931.363 kb on + strandat 931.363 kb on + strandat 931.368 kb on - strandat 931.368 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.373 kb on + strandat 931.373 kb on + strandat 931.397 kb on - strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.399 kb on - strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.478 kb on + strandat 931.478 kb on + strandat 931.594 kb on - strand, within MMP_RS04900at 931.648 kb on - strand, within MMP_RS04900at 931.649 kb on + strand, within MMP_RS04900at 931.649 kb on + strand, within MMP_RS04900at 931.717 kb on + strand, within MMP_RS04900at 931.963 kb on + strand, within MMP_RS04900at 931.963 kb on + strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.061 kb on + strand, within MMP_RS04900at 932.061 kb on + strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.096 kb on + strand, within MMP_RS04900at 932.096 kb on + strand, within MMP_RS04900at 932.099 kb on - strand, within MMP_RS04900at 932.100 kb on + strand, within MMP_RS04900at 932.137 kb on - strand, within MMP_RS04900at 932.150 kb on + strand, within MMP_RS04900at 932.237 kb on - strand, within MMP_RS04900at 932.276 kb on + strand, within MMP_RS04900at 932.287 kb on - strand, within MMP_RS04900at 932.287 kb on - strand, within MMP_RS04900at 932.343 kb on - strand, within MMP_RS04900at 932.396 kb on - strand, within MMP_RS04900at 932.397 kb on + strand, within MMP_RS04900at 932.397 kb on + strand, within MMP_RS04900at 932.420 kb on + strand, within MMP_RS04900at 932.503 kb on + strand, within MMP_RS04900at 932.535 kb on - strand, within MMP_RS04900at 932.536 kb on + strand, within MMP_RS04900at 932.536 kb on + strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.572 kb on + strand, within MMP_RS04900at 932.590 kb on - strand, within MMP_RS04900at 932.591 kb on + strand, within MMP_RS04900at 932.591 kb on + strand, within MMP_RS04900at 932.624 kb on + strand, within MMP_RS04900at 932.659 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.672 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.790 kb on + strand, within MMP_RS04900at 932.821 kb on + strand, within MMP_RS04900at 932.846 kb on - strand, within MMP_RS04900at 932.918 kb on + strand, within MMP_RS04900at 932.937 kb on - strand, within MMP_RS04900at 932.937 kb on - strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.941 kb on - strand, within MMP_RS04900at 932.941 kb on - strand, within MMP_RS04900at 932.942 kb on + strand, within MMP_RS04900at 932.942 kb on + strand, within MMP_RS04900at 932.951 kb on + strand, within MMP_RS04900at 932.971 kb on + strand, within MMP_RS04900at 932.985 kb on - strand, within MMP_RS04900at 933.004 kb on - strand, within MMP_RS04900at 933.010 kb on + strand, within MMP_RS04900at 933.023 kb on + strand, within MMP_RS04900at 933.102 kb on - strandat 933.176 kb on - strandat 933.177 kb on + strandat 933.179 kb on + strandat 933.179 kb on + strandat 933.180 kb on - strandat 933.181 kb on + strandat 933.239 kb on - strandat 933.249 kb on + strandat 933.280 kb on - strandat 933.528 kb on - strandat 933.779 kb on + strandat 933.923 kb on - strandat 934.138 kb on - strandat 934.138 kb on - strandat 934.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Nitrofurantoin 0.25 mM
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930,466 - MMP_RS04895 0.16 +0.7
930,532 - MMP_RS04895 0.23 -0.4
930,566 - MMP_RS04895 0.26 -1.6
930,566 - MMP_RS04895 0.26 +1.3
930,567 + MMP_RS04895 0.26 -0.1
930,567 + MMP_RS04895 0.26 +2.1
930,585 - MMP_RS04895 0.28 -2.4
930,585 - MMP_RS04895 0.28 -1.0
930,585 - MMP_RS04895 0.28 -0.9
930,586 + MMP_RS04895 0.28 +0.2
930,587 - MMP_RS04895 0.28 +1.0
930,587 - MMP_RS04895 0.28 -0.3
930,587 - MMP_RS04895 0.28 -0.1
930,587 - MMP_RS04895 0.28 -1.6
930,587 - MMP_RS04895 0.28 -0.3
930,588 + MMP_RS04895 0.28 +1.7
930,588 + MMP_RS04895 0.28 +0.5
930,588 + MMP_RS04895 0.28 -1.2
930,588 + MMP_RS04895 0.28 +2.2
930,588 + MMP_RS04895 0.28 -1.0
930,588 + MMP_RS04895 0.28 +1.6
930,590 + MMP_RS04895 0.29 -0.6
930,590 + MMP_RS04895 0.29 +1.9
930,590 + MMP_RS04895 0.29 +0.4
930,617 + MMP_RS04895 0.31 +1.3
930,648 - MMP_RS04895 0.34 -0.6
930,694 - MMP_RS04895 0.39 -0.8
930,705 - MMP_RS04895 0.40 +0.8
930,724 - MMP_RS04895 0.42 +1.8
930,725 + MMP_RS04895 0.42 -0.4
930,725 + MMP_RS04895 0.42 +0.1
930,743 - MMP_RS04895 0.44 -1.2
930,744 + MMP_RS04895 0.44 -1.1
930,744 + MMP_RS04895 0.44 -0.7
930,766 + MMP_RS04895 0.46 +0.3
930,788 - MMP_RS04895 0.48 -1.2
930,848 - MMP_RS04895 0.54 +0.1
930,848 - MMP_RS04895 0.54 +2.2
930,851 - MMP_RS04895 0.54 -0.1
930,851 - MMP_RS04895 0.54 -0.8
930,852 + MMP_RS04895 0.55 +0.7
930,852 + MMP_RS04895 0.55 +0.3
930,882 - MMP_RS04895 0.57 +1.0
930,921 - MMP_RS04895 0.61 -0.5
930,970 - MMP_RS04895 0.66 -0.2
931,000 - MMP_RS04895 0.69 -0.5
931,001 + MMP_RS04895 0.69 -0.3
931,001 + MMP_RS04895 0.69 +0.2
931,001 + MMP_RS04895 0.69 -0.1
931,001 + MMP_RS04895 0.69 -1.8
931,001 + MMP_RS04895 0.69 -0.6
931,002 - MMP_RS04895 0.69 -0.2
931,004 - MMP_RS04895 0.70 +0.8
931,005 + MMP_RS04895 0.70 -1.7
931,005 + MMP_RS04895 0.70 +1.0
931,019 + MMP_RS04895 0.71 -0.3
931,057 - MMP_RS04895 0.75 +0.9
931,084 - MMP_RS04895 0.77 -0.0
931,099 - MMP_RS04895 0.79 -1.0
931,125 - MMP_RS04895 0.82 +0.5
931,133 + MMP_RS04895 0.82 -0.1
931,191 - MMP_RS04895 0.88 -0.9
931,191 - MMP_RS04895 0.88 -2.9
931,191 - MMP_RS04895 0.88 +0.4
931,191 - MMP_RS04895 0.88 +2.3
931,191 - MMP_RS04895 0.88 -0.6
931,192 + MMP_RS04895 0.88 +0.4
931,192 + MMP_RS04895 0.88 -0.9
931,192 + MMP_RS04895 0.88 -1.2
931,193 - MMP_RS04895 0.88 +0.7
931,193 - MMP_RS04895 0.88 -0.5
931,193 - MMP_RS04895 0.88 -0.6
931,194 + MMP_RS04895 0.88 +0.3
931,194 + MMP_RS04895 0.88 -0.1
931,194 + MMP_RS04895 0.88 +0.3
931,194 + MMP_RS04895 0.88 -0.5
931,218 - -1.0
931,218 - -1.0
931,219 + +1.3
931,219 + -0.3
931,219 + +1.2
931,219 + -0.4
931,221 - +1.1
931,221 - -1.2
931,222 + -0.3
931,242 - +0.1
931,249 + +0.2
931,249 + +0.3
931,285 - +0.4
931,293 - +0.1
931,294 + +0.1
931,333 - +0.6
931,343 - -0.1
931,344 + +0.6
931,344 + +0.6
931,345 - -1.4
931,346 + -1.3
931,351 - -2.2
931,352 + -2.1
931,362 - +1.5
931,362 - -0.7
931,363 + +0.4
931,363 + -0.2
931,368 - -1.8
931,368 - +0.7
931,372 - -1.7
931,372 - -2.6
931,373 + -1.0
931,373 + -0.5
931,397 - -1.8
931,398 + -2.6
931,398 + -3.4
931,398 + -3.6
931,398 + -0.7
931,398 + -1.3
931,399 - +1.8
931,400 + -4.3
931,400 + -3.5
931,400 + -3.7
931,400 + -1.5
931,400 + -3.5
931,478 + -2.0
931,478 + -2.7
931,594 - MMP_RS04900 0.11 -0.9
931,648 - MMP_RS04900 0.13 -3.3
931,649 + MMP_RS04900 0.14 -4.5
931,649 + MMP_RS04900 0.14 +1.7
931,717 + MMP_RS04900 0.17 -2.4
931,963 + MMP_RS04900 0.31 -1.2
931,963 + MMP_RS04900 0.31 -2.6
932,048 - MMP_RS04900 0.35 -3.5
932,048 - MMP_RS04900 0.35 -2.1
932,048 - MMP_RS04900 0.35 -2.9
932,049 + MMP_RS04900 0.35 -1.3
932,049 + MMP_RS04900 0.35 -1.3
932,049 + MMP_RS04900 0.35 -1.7
932,061 + MMP_RS04900 0.36 -2.3
932,061 + MMP_RS04900 0.36 -3.8
932,062 - MMP_RS04900 0.36 -4.2
932,062 - MMP_RS04900 0.36 -1.9
932,062 - MMP_RS04900 0.36 -1.9
932,062 - MMP_RS04900 0.36 -3.2
932,062 - MMP_RS04900 0.36 -2.8
932,063 + MMP_RS04900 0.36 -3.1
932,063 + MMP_RS04900 0.36 -0.4
932,063 + MMP_RS04900 0.36 -4.1
932,063 + MMP_RS04900 0.36 -3.4
932,083 - MMP_RS04900 0.37 -3.1
932,083 - MMP_RS04900 0.37 -0.1
932,083 - MMP_RS04900 0.37 -3.4
932,095 - MMP_RS04900 0.38 -3.3
932,095 - MMP_RS04900 0.38 -2.9
932,095 - MMP_RS04900 0.38 +0.9
932,095 - MMP_RS04900 0.38 -3.2
932,095 - MMP_RS04900 0.38 -4.0
932,096 + MMP_RS04900 0.38 -1.8
932,096 + MMP_RS04900 0.38 -1.4
932,099 - MMP_RS04900 0.38 -3.0
932,100 + MMP_RS04900 0.38 -2.4
932,137 - MMP_RS04900 0.40 -1.9
932,150 + MMP_RS04900 0.41 -3.8
932,237 - MMP_RS04900 0.45 -1.2
932,276 + MMP_RS04900 0.48 -2.2
932,287 - MMP_RS04900 0.48 -1.1
932,287 - MMP_RS04900 0.48 +1.1
932,343 - MMP_RS04900 0.51 -1.7
932,396 - MMP_RS04900 0.54 -3.7
932,397 + MMP_RS04900 0.54 -3.4
932,397 + MMP_RS04900 0.54 -1.7
932,420 + MMP_RS04900 0.55 -2.1
932,503 + MMP_RS04900 0.60 -4.2
932,535 - MMP_RS04900 0.62 -0.4
932,536 + MMP_RS04900 0.62 -1.1
932,536 + MMP_RS04900 0.62 -1.1
932,571 - MMP_RS04900 0.64 +0.2
932,571 - MMP_RS04900 0.64 -3.2
932,571 - MMP_RS04900 0.64 -2.3
932,571 - MMP_RS04900 0.64 -2.8
932,572 + MMP_RS04900 0.64 -3.7
932,590 - MMP_RS04900 0.65 -1.6
932,591 + MMP_RS04900 0.65 -1.8
932,591 + MMP_RS04900 0.65 -1.6
932,624 + MMP_RS04900 0.66 -2.1
932,659 - MMP_RS04900 0.68 -3.3
932,671 - MMP_RS04900 0.69 -2.9
932,671 - MMP_RS04900 0.69 -1.9
932,671 - MMP_RS04900 0.69 -4.2
932,672 + MMP_RS04900 0.69 -2.6
932,717 + MMP_RS04900 0.71 -0.6
932,717 + MMP_RS04900 0.71 -4.8
932,717 + MMP_RS04900 0.71 -3.4
932,790 + MMP_RS04900 0.75 -1.7
932,821 + MMP_RS04900 0.77 -0.6
932,846 - MMP_RS04900 0.79 -4.4
932,918 + MMP_RS04900 0.82 -2.0
932,937 - MMP_RS04900 0.83 -2.5
932,937 - MMP_RS04900 0.83 -3.8
932,938 + MMP_RS04900 0.83 -2.8
932,938 + MMP_RS04900 0.83 -1.6
932,938 + MMP_RS04900 0.83 -2.6
932,941 - MMP_RS04900 0.84 +0.2
932,941 - MMP_RS04900 0.84 -0.6
932,942 + MMP_RS04900 0.84 -2.6
932,942 + MMP_RS04900 0.84 -2.4
932,951 + MMP_RS04900 0.84 -1.2
932,971 + MMP_RS04900 0.85 -4.3
932,985 - MMP_RS04900 0.86 -4.4
933,004 - MMP_RS04900 0.87 -2.3
933,010 + MMP_RS04900 0.87 -3.5
933,023 + MMP_RS04900 0.88 -3.1
933,102 - -4.8
933,176 - +0.3
933,177 + -0.2
933,179 + -2.4
933,179 + -0.6
933,180 - +0.4
933,181 + +1.6
933,239 - -0.3
933,249 + +0.5
933,280 - +0.3
933,528 - -0.6
933,779 + -1.9
933,923 - -1.8
934,138 - +1.3
934,138 - -1.7
934,174 - +0.3

Or see this region's nucleotide sequence