Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03770

Experiment: Formate with Nitrofurantoin 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03760 and MMP_RS03765 are separated by 37 nucleotidesMMP_RS03765 and MMP_RS03770 are separated by 252 nucleotidesMMP_RS03770 and MMP_RS03775 are separated by 104 nucleotidesMMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585 _RS03760 MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030 _RS03765 MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923 _RS03770 MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708 _RS03775 MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381 _RS03780 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 711.342 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.373 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.412 kb on - strand, within MMP_RS03760at 711.427 kb on - strand, within MMP_RS03760at 711.435 kb on + strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.566 kb on + strandat 711.569 kb on - strandat 711.598 kb on - strandat 711.598 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.633 kb on - strandat 711.633 kb on - strandat 711.690 kb on - strand, within MMP_RS03765at 711.868 kb on - strand, within MMP_RS03765at 711.870 kb on - strand, within MMP_RS03765at 711.873 kb on - strand, within MMP_RS03765at 711.893 kb on - strand, within MMP_RS03765at 711.893 kb on - strand, within MMP_RS03765at 711.960 kb on - strand, within MMP_RS03765at 711.984 kb on - strand, within MMP_RS03765at 711.993 kb on - strandat 712.021 kb on - strandat 712.044 kb on + strandat 712.155 kb on + strandat 712.380 kb on - strandat 712.413 kb on - strandat 712.431 kb on - strandat 712.432 kb on + strandat 712.721 kb on + strand, within MMP_RS03770at 712.723 kb on - strand, within MMP_RS03770at 712.755 kb on + strand, within MMP_RS03770at 712.860 kb on - strand, within MMP_RS03770at 712.901 kb on + strand, within MMP_RS03770at 713.064 kb on - strand, within MMP_RS03770at 713.067 kb on + strand, within MMP_RS03770at 713.153 kb on - strand, within MMP_RS03770at 713.156 kb on + strand, within MMP_RS03770at 713.234 kb on - strand, within MMP_RS03770at 713.235 kb on + strand, within MMP_RS03770at 713.281 kb on - strand, within MMP_RS03770at 713.286 kb on + strand, within MMP_RS03770at 713.853 kb on - strandat 713.939 kb on + strandat 713.962 kb on - strandat 714.010 kb on - strandat 714.011 kb on + strandat 714.075 kb on - strandat 714.228 kb on - strand, within MMP_RS03775at 714.386 kb on - strand, within MMP_RS03775at 714.403 kb on - strand, within MMP_RS03775at 714.404 kb on + strand, within MMP_RS03775at 714.660 kb on + strandat 714.816 kb on - strandat 714.817 kb on + strandat 714.859 kb on - strandat 714.861 kb on - strandat 714.877 kb on + strandat 714.887 kb on - strandat 714.890 kb on - strandat 714.923 kb on + strand, within MMP_RS03780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Nitrofurantoin 0.25 mM
remove
711,342 - MMP_RS03760 0.30 +0.0
711,371 - MMP_RS03760 0.39 -0.6
711,371 - MMP_RS03760 0.39 -0.8
711,371 - MMP_RS03760 0.39 -1.8
711,371 - MMP_RS03760 0.39 -1.0
711,372 + MMP_RS03760 0.39 +0.3
711,372 + MMP_RS03760 0.39 -0.4
711,372 + MMP_RS03760 0.39 +1.3
711,372 + MMP_RS03760 0.39 +0.6
711,372 + MMP_RS03760 0.39 -0.8
711,372 + MMP_RS03760 0.39 +1.1
711,372 + MMP_RS03760 0.39 -0.3
711,373 - MMP_RS03760 0.39 -1.2
711,402 - MMP_RS03760 0.48 -1.2
711,402 - MMP_RS03760 0.48 -1.1
711,408 - MMP_RS03760 0.49 -1.7
711,408 - MMP_RS03760 0.49 -0.2
711,412 - MMP_RS03760 0.50 -0.1
711,427 - MMP_RS03760 0.55 -0.7
711,435 + MMP_RS03760 0.57 -0.8
711,444 - MMP_RS03760 0.60 -1.3
711,444 - MMP_RS03760 0.60 -0.1
711,566 + +0.2
711,569 - -1.2
711,598 - -0.4
711,598 - +1.1
711,602 - +0.8
711,602 - -0.5
711,602 - -3.3
711,633 - -0.1
711,633 - -2.6
711,690 - MMP_RS03765 0.16 -0.4
711,868 - MMP_RS03765 0.60 -1.6
711,870 - MMP_RS03765 0.61 +0.2
711,873 - MMP_RS03765 0.61 -0.6
711,893 - MMP_RS03765 0.66 +1.0
711,893 - MMP_RS03765 0.66 +1.4
711,960 - MMP_RS03765 0.83 -0.5
711,984 - MMP_RS03765 0.88 -0.6
711,993 - +1.2
712,021 - +0.7
712,044 + -0.4
712,155 + +0.2
712,380 - -3.0
712,413 - -1.1
712,431 - -0.6
712,432 + -0.0
712,721 + MMP_RS03770 0.27 +0.8
712,723 - MMP_RS03770 0.27 -2.1
712,755 + MMP_RS03770 0.29 +0.9
712,860 - MMP_RS03770 0.35 -1.7
712,901 + MMP_RS03770 0.38 -0.9
713,064 - MMP_RS03770 0.48 -2.3
713,067 + MMP_RS03770 0.48 -1.0
713,153 - MMP_RS03770 0.53 +0.4
713,156 + MMP_RS03770 0.53 -1.3
713,234 - MMP_RS03770 0.58 -2.3
713,235 + MMP_RS03770 0.58 -0.6
713,281 - MMP_RS03770 0.61 -1.1
713,286 + MMP_RS03770 0.61 -1.8
713,853 - +0.1
713,939 + -1.3
713,962 - -1.1
714,010 - +1.5
714,011 + -0.8
714,075 - +2.0
714,228 - MMP_RS03775 0.29 -1.1
714,386 - MMP_RS03775 0.53 +0.4
714,403 - MMP_RS03775 0.55 -1.4
714,404 + MMP_RS03775 0.55 +1.4
714,660 + +1.1
714,816 - -0.1
714,817 + +0.4
714,859 - -2.2
714,861 - -0.4
714,877 + -0.0
714,887 - +0.0
714,890 - -1.7
714,923 + MMP_RS03780 0.13 +0.6

Or see this region's nucleotide sequence