Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03760

Experiment: Formate with Nitrofurantoin 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03750 and MMP_RS03755 are separated by 12 nucleotidesMMP_RS03755 and MMP_RS03760 are separated by 383 nucleotidesMMP_RS03760 and MMP_RS03765 are separated by 37 nucleotidesMMP_RS03765 and MMP_RS03770 are separated by 252 nucleotides MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302 _RS03750 MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851 _RS03755 MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585 _RS03760 MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030 _RS03765 MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923 _RS03770 Position (kb) 711 712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 710.248 kb on + strand, within MMP_RS03750at 710.301 kb on + strandat 710.326 kb on - strandat 710.375 kb on + strand, within MMP_RS03755at 710.415 kb on + strand, within MMP_RS03755at 710.478 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.503 kb on + strand, within MMP_RS03755at 710.524 kb on - strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.616 kb on + strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.653 kb on - strand, within MMP_RS03755at 710.750 kb on + strand, within MMP_RS03755at 710.767 kb on - strand, within MMP_RS03755at 710.783 kb on - strand, within MMP_RS03755at 710.784 kb on + strand, within MMP_RS03755at 710.818 kb on + strandat 710.831 kb on - strandat 710.832 kb on + strandat 710.832 kb on + strandat 710.832 kb on + strandat 710.875 kb on - strandat 710.875 kb on - strandat 710.942 kb on + strandat 711.055 kb on - strandat 711.055 kb on - strandat 711.082 kb on - strandat 711.086 kb on + strandat 711.088 kb on - strandat 711.092 kb on - strandat 711.092 kb on - strandat 711.092 kb on - strandat 711.094 kb on - strandat 711.202 kb on - strandat 711.202 kb on - strandat 711.205 kb on + strandat 711.255 kb on + strandat 711.342 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.371 kb on - strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.372 kb on + strand, within MMP_RS03760at 711.373 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.402 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.408 kb on - strand, within MMP_RS03760at 711.412 kb on - strand, within MMP_RS03760at 711.427 kb on - strand, within MMP_RS03760at 711.435 kb on + strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.444 kb on - strand, within MMP_RS03760at 711.566 kb on + strandat 711.569 kb on - strandat 711.598 kb on - strandat 711.598 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.602 kb on - strandat 711.633 kb on - strandat 711.633 kb on - strandat 711.690 kb on - strand, within MMP_RS03765at 711.868 kb on - strand, within MMP_RS03765at 711.870 kb on - strand, within MMP_RS03765at 711.873 kb on - strand, within MMP_RS03765at 711.893 kb on - strand, within MMP_RS03765at 711.893 kb on - strand, within MMP_RS03765at 711.960 kb on - strand, within MMP_RS03765at 711.984 kb on - strand, within MMP_RS03765at 711.993 kb on - strandat 712.021 kb on - strandat 712.044 kb on + strandat 712.155 kb on + strandat 712.380 kb on - strandat 712.413 kb on - strandat 712.431 kb on - strandat 712.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Nitrofurantoin 0.25 mM
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710,248 + MMP_RS03750 0.87 +0.3
710,301 + -0.7
710,326 - +1.1
710,375 + MMP_RS03755 0.11 -0.6
710,415 + MMP_RS03755 0.19 +0.8
710,478 + MMP_RS03755 0.30 -1.0
710,483 + MMP_RS03755 0.31 +1.4
710,483 + MMP_RS03755 0.31 +2.5
710,502 - MMP_RS03755 0.35 -0.1
710,502 - MMP_RS03755 0.35 +1.3
710,503 + MMP_RS03755 0.35 +0.5
710,524 - MMP_RS03755 0.39 +0.0
710,525 + MMP_RS03755 0.39 -0.4
710,525 + MMP_RS03755 0.39 +1.0
710,525 + MMP_RS03755 0.39 +0.9
710,616 + MMP_RS03755 0.56 +1.7
710,636 - MMP_RS03755 0.60 +1.7
710,636 - MMP_RS03755 0.60 +0.8
710,637 + MMP_RS03755 0.60 +0.2
710,637 + MMP_RS03755 0.60 -0.1
710,643 - MMP_RS03755 0.61 +1.2
710,643 - MMP_RS03755 0.61 +0.2
710,643 - MMP_RS03755 0.61 -0.0
710,643 - MMP_RS03755 0.61 -4.0
710,644 + MMP_RS03755 0.61 +0.4
710,644 + MMP_RS03755 0.61 -0.2
710,653 - MMP_RS03755 0.63 -0.0
710,750 + MMP_RS03755 0.81 +1.6
710,767 - MMP_RS03755 0.84 +1.4
710,783 - MMP_RS03755 0.87 +0.4
710,784 + MMP_RS03755 0.87 +0.2
710,818 + +1.0
710,831 - +0.5
710,832 + +1.2
710,832 + -2.1
710,832 + +0.8
710,875 - -0.3
710,875 - -0.4
710,942 + +0.4
711,055 - +0.1
711,055 - +1.6
711,082 - -1.1
711,086 + -0.4
711,088 - +0.0
711,092 - +4.3
711,092 - -0.2
711,092 - +0.7
711,094 - -1.4
711,202 - -0.4
711,202 - -0.4
711,205 + -1.0
711,255 + -1.8
711,342 - MMP_RS03760 0.30 +0.0
711,371 - MMP_RS03760 0.39 -0.6
711,371 - MMP_RS03760 0.39 -0.8
711,371 - MMP_RS03760 0.39 -1.8
711,371 - MMP_RS03760 0.39 -1.0
711,372 + MMP_RS03760 0.39 +0.3
711,372 + MMP_RS03760 0.39 -0.4
711,372 + MMP_RS03760 0.39 +1.3
711,372 + MMP_RS03760 0.39 +0.6
711,372 + MMP_RS03760 0.39 -0.8
711,372 + MMP_RS03760 0.39 +1.1
711,372 + MMP_RS03760 0.39 -0.3
711,373 - MMP_RS03760 0.39 -1.2
711,402 - MMP_RS03760 0.48 -1.2
711,402 - MMP_RS03760 0.48 -1.1
711,408 - MMP_RS03760 0.49 -1.7
711,408 - MMP_RS03760 0.49 -0.2
711,412 - MMP_RS03760 0.50 -0.1
711,427 - MMP_RS03760 0.55 -0.7
711,435 + MMP_RS03760 0.57 -0.8
711,444 - MMP_RS03760 0.60 -1.3
711,444 - MMP_RS03760 0.60 -0.1
711,566 + +0.2
711,569 - -1.2
711,598 - -0.4
711,598 - +1.1
711,602 - +0.8
711,602 - -0.5
711,602 - -3.3
711,633 - -0.1
711,633 - -2.6
711,690 - MMP_RS03765 0.16 -0.4
711,868 - MMP_RS03765 0.60 -1.6
711,870 - MMP_RS03765 0.61 +0.2
711,873 - MMP_RS03765 0.61 -0.6
711,893 - MMP_RS03765 0.66 +1.0
711,893 - MMP_RS03765 0.66 +1.4
711,960 - MMP_RS03765 0.83 -0.5
711,984 - MMP_RS03765 0.88 -0.6
711,993 - +1.2
712,021 - +0.7
712,044 + -0.4
712,155 + +0.2
712,380 - -3.0
712,413 - -1.1
712,431 - -0.6
712,432 + -0.0

Or see this region's nucleotide sequence