Experiment: Formate with Nitrofurantoin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00950 and MMP_RS00955 are separated by 21 nucleotides MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 177.737 kb on + strand, within MMP_RS00950 at 178.056 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.181 kb on + strand, within MMP_RS00950 at 178.242 kb on + strand, within MMP_RS00950 at 178.270 kb on - strand, within MMP_RS00950 at 178.417 kb on - strand at 178.449 kb on + strand at 178.451 kb on + strand at 178.472 kb on + strand at 178.604 kb on - strand at 178.670 kb on + strand, within MMP_RS00955 at 178.758 kb on - strand, within MMP_RS00955 at 179.123 kb on - strand, within MMP_RS00955 at 179.124 kb on + strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Nitrofurantoin 0.25 mM remove 177,737 + MMP_RS00950 0.32 -1.1 178,056 - MMP_RS00950 0.61 -1.5 178,117 - MMP_RS00950 0.66 -1.3 178,117 - MMP_RS00950 0.66 -1.6 178,117 - MMP_RS00950 0.66 -0.2 178,181 + MMP_RS00950 0.72 +0.2 178,242 + MMP_RS00950 0.77 +1.2 178,270 - MMP_RS00950 0.80 -0.5 178,417 - -0.2 178,449 + +0.6 178,451 + +0.3 178,472 + +0.8 178,604 - -0.2 178,670 + MMP_RS00955 0.17 -0.5 178,758 - MMP_RS00955 0.28 -1.2 179,123 - MMP_RS00955 0.70 +0.2 179,124 + MMP_RS00955 0.70 -0.5 179,126 - MMP_RS00955 0.71 -1.4 179,126 - MMP_RS00955 0.71 -0.9 179,143 - MMP_RS00955 0.72 +0.3 179,143 - MMP_RS00955 0.72 +0.5 179,144 + MMP_RS00955 0.73 -0.7 179,144 + MMP_RS00955 0.73 -2.3 179,144 + MMP_RS00955 0.73 -0.8 179,144 + MMP_RS00955 0.73 -1.1 179,146 + MMP_RS00955 0.73 +0.8 179,229 - MMP_RS00955 0.83 -1.2 179,231 - MMP_RS00955 0.83 +0.0 179,231 - MMP_RS00955 0.83 -0.4 179,232 + MMP_RS00955 0.83 -0.3 179,232 + MMP_RS00955 0.83 -0.9 179,285 + MMP_RS00955 0.89 +0.1 179,386 - -0.5 179,438 + +0.8 179,573 - MMP_RS00960 0.26 -1.3 179,740 + MMP_RS00960 0.48 -0.2 179,889 + MMP_RS00960 0.68 +0.4 179,959 - MMP_RS00960 0.77 -0.3 180,064 - +0.8
Or see this region's nucleotide sequence