Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19170

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19165 and CSW01_19170 are separated by 391 nucleotidesCSW01_19170 and CSW01_19175 are separated by 65 nucleotidesCSW01_19175 and CSW01_19180 are separated by 10 nucleotidesCSW01_19180 and CSW01_19185 are separated by 0 nucleotides CSW01_19165: CSW01_19165 - hypothetical protein, at 960,763 to 961,494 _19165 CSW01_19170: CSW01_19170 - Na+/H+ antiporter NhaD, at 961,886 to 963,319 _19170 CSW01_19175: CSW01_19175 - hypothetical protein, at 963,385 to 963,786 _19175 CSW01_19180: CSW01_19180 - cysteine methyltransferase, at 963,797 to 964,270 _19180 CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629 _19185 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -1 0 1 2at 960.893 kb on - strand, within CSW01_19165at 960.934 kb on - strand, within CSW01_19165at 960.991 kb on + strand, within CSW01_19165at 960.992 kb on + strand, within CSW01_19165at 961.036 kb on - strand, within CSW01_19165at 961.051 kb on - strand, within CSW01_19165at 961.082 kb on - strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.144 kb on - strand, within CSW01_19165at 961.151 kb on - strand, within CSW01_19165at 961.159 kb on - strand, within CSW01_19165at 961.201 kb on + strand, within CSW01_19165at 961.209 kb on - strand, within CSW01_19165at 961.230 kb on + strand, within CSW01_19165at 961.230 kb on + strand, within CSW01_19165at 961.238 kb on - strand, within CSW01_19165at 961.240 kb on - strand, within CSW01_19165at 961.276 kb on + strand, within CSW01_19165at 961.277 kb on - strand, within CSW01_19165at 961.390 kb on - strand, within CSW01_19165at 961.435 kb on + strandat 961.443 kb on - strandat 961.533 kb on - strandat 961.671 kb on + strandat 961.725 kb on + strandat 961.797 kb on + strandat 961.797 kb on + strandat 961.832 kb on - strandat 961.914 kb on - strandat 961.930 kb on + strandat 961.992 kb on + strandat 962.018 kb on + strandat 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.213 kb on + strand, within CSW01_19170at 962.213 kb on + strand, within CSW01_19170at 962.221 kb on - strand, within CSW01_19170at 962.221 kb on - strand, within CSW01_19170at 962.255 kb on + strand, within CSW01_19170at 962.404 kb on + strand, within CSW01_19170at 962.460 kb on - strand, within CSW01_19170at 962.464 kb on + strand, within CSW01_19170at 962.480 kb on - strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.523 kb on + strand, within CSW01_19170at 962.649 kb on + strand, within CSW01_19170at 962.865 kb on + strand, within CSW01_19170at 962.873 kb on - strand, within CSW01_19170at 962.877 kb on + strand, within CSW01_19170at 962.939 kb on + strand, within CSW01_19170at 962.939 kb on + strand, within CSW01_19170at 962.947 kb on - strand, within CSW01_19170at 962.957 kb on + strand, within CSW01_19170at 962.965 kb on - strand, within CSW01_19170at 962.965 kb on - strand, within CSW01_19170at 963.006 kb on - strand, within CSW01_19170at 963.131 kb on - strand, within CSW01_19170at 963.185 kb on - strandat 963.201 kb on - strandat 963.224 kb on + strandat 963.271 kb on + strandat 963.279 kb on - strandat 963.386 kb on + strandat 963.386 kb on + strandat 963.451 kb on - strand, within CSW01_19175at 963.483 kb on - strand, within CSW01_19175at 963.600 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.725 kb on - strand, within CSW01_19175at 963.765 kb on + strandat 963.773 kb on - strandat 963.828 kb on + strandat 963.828 kb on + strandat 963.835 kb on + strandat 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 964.045 kb on - strand, within CSW01_19180at 964.078 kb on - strand, within CSW01_19180at 964.082 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.137 kb on - strand, within CSW01_19180at 964.175 kb on - strand, within CSW01_19180at 964.199 kb on + strand, within CSW01_19180at 964.217 kb on + strand, within CSW01_19180at 964.236 kb on - strandat 964.245 kb on + strandat 964.246 kb on - strandat 964.251 kb on - strandat 964.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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960,893 - CSW01_19165 0.18 +0.5
960,934 - CSW01_19165 0.23 +1.3
960,991 + CSW01_19165 0.31 +0.1
960,992 + CSW01_19165 0.31 +0.3
961,036 - CSW01_19165 0.37 -0.6
961,051 - CSW01_19165 0.39 +0.8
961,082 - CSW01_19165 0.44 +0.9
961,141 + CSW01_19165 0.52 +0.4
961,141 + CSW01_19165 0.52 -0.3
961,141 + CSW01_19165 0.52 +0.6
961,141 + CSW01_19165 0.52 -0.6
961,144 - CSW01_19165 0.52 +0.3
961,151 - CSW01_19165 0.53 -0.6
961,159 - CSW01_19165 0.54 -0.2
961,201 + CSW01_19165 0.60 +0.1
961,209 - CSW01_19165 0.61 +0.2
961,230 + CSW01_19165 0.64 +0.2
961,230 + CSW01_19165 0.64 -0.9
961,238 - CSW01_19165 0.65 -0.6
961,240 - CSW01_19165 0.65 +0.0
961,276 + CSW01_19165 0.70 -0.7
961,277 - CSW01_19165 0.70 +0.1
961,390 - CSW01_19165 0.86 +0.1
961,435 + +0.4
961,443 - -0.1
961,533 - +0.2
961,671 + +0.2
961,725 + +0.2
961,797 + +1.5
961,797 + +0.3
961,832 - -0.3
961,914 - -0.0
961,930 + +0.2
961,992 + +0.5
962,018 + -0.2
962,155 - CSW01_19170 0.19 +0.2
962,155 - CSW01_19170 0.19 +0.5
962,155 - CSW01_19170 0.19 -0.1
962,155 - CSW01_19170 0.19 -0.6
962,213 + CSW01_19170 0.23 +0.8
962,213 + CSW01_19170 0.23 +0.4
962,221 - CSW01_19170 0.23 -0.3
962,221 - CSW01_19170 0.23 +0.2
962,255 + CSW01_19170 0.26 +0.4
962,404 + CSW01_19170 0.36 +1.7
962,460 - CSW01_19170 0.40 +0.6
962,464 + CSW01_19170 0.40 +0.1
962,480 - CSW01_19170 0.41 +0.1
962,490 + CSW01_19170 0.42 -0.8
962,490 + CSW01_19170 0.42 +0.3
962,490 + CSW01_19170 0.42 -0.0
962,490 + CSW01_19170 0.42 -0.1
962,490 + CSW01_19170 0.42 -0.2
962,490 + CSW01_19170 0.42 -0.7
962,523 + CSW01_19170 0.44 -0.3
962,649 + CSW01_19170 0.53 +0.7
962,865 + CSW01_19170 0.68 -0.3
962,873 - CSW01_19170 0.69 -0.2
962,877 + CSW01_19170 0.69 -0.1
962,939 + CSW01_19170 0.73 -0.9
962,939 + CSW01_19170 0.73 -0.5
962,947 - CSW01_19170 0.74 +0.7
962,957 + CSW01_19170 0.75 +0.1
962,965 - CSW01_19170 0.75 +0.6
962,965 - CSW01_19170 0.75 +0.8
963,006 - CSW01_19170 0.78 -1.5
963,131 - CSW01_19170 0.87 +0.1
963,185 - +1.3
963,201 - +0.4
963,224 + +0.4
963,271 + +0.1
963,279 - +0.0
963,386 + +0.5
963,386 + +0.3
963,451 - CSW01_19175 0.16 +0.5
963,483 - CSW01_19175 0.24 -0.3
963,600 - CSW01_19175 0.53 +0.1
963,650 - CSW01_19175 0.66 +0.4
963,650 - CSW01_19175 0.66 +0.2
963,652 - CSW01_19175 0.66 +0.1
963,652 - CSW01_19175 0.66 +1.1
963,725 - CSW01_19175 0.85 +0.5
963,765 + +0.2
963,773 - -0.3
963,828 + -1.4
963,828 + +0.5
963,835 + -0.6
963,948 + CSW01_19180 0.32 -0.6
963,948 + CSW01_19180 0.32 +0.2
963,948 + CSW01_19180 0.32 +0.2
963,948 + CSW01_19180 0.32 +0.2
963,956 - CSW01_19180 0.34 +0.9
963,956 - CSW01_19180 0.34 -0.4
964,045 - CSW01_19180 0.52 -0.6
964,078 - CSW01_19180 0.59 -0.7
964,082 + CSW01_19180 0.60 -1.0
964,129 + CSW01_19180 0.70 +2.4
964,129 + CSW01_19180 0.70 +0.2
964,129 + CSW01_19180 0.70 +0.1
964,137 - CSW01_19180 0.72 -1.1
964,175 - CSW01_19180 0.80 +0.3
964,199 + CSW01_19180 0.85 -0.3
964,217 + CSW01_19180 0.89 -0.3
964,236 - +1.7
964,245 + +0.2
964,246 - +0.4
964,251 - +0.7
964,312 - -0.0

Or see this region's nucleotide sequence