Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19030

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19025 and CSW01_19030 are separated by 151 nucleotidesCSW01_19030 and CSW01_19035 are separated by 122 nucleotides CSW01_19025: CSW01_19025 - LysR family transcriptional regulator, at 928,185 to 929,084 _19025 CSW01_19030: CSW01_19030 - L-lactate permease, at 929,236 to 930,984 _19030 CSW01_19035: CSW01_19035 - alpha-hydroxy-acid oxidizing enzyme, at 931,107 to 932,243 _19035 Position (kb) 929 930 931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 928.352 kb on + strand, within CSW01_19025at 928.367 kb on + strand, within CSW01_19025at 928.376 kb on - strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.426 kb on + strand, within CSW01_19025at 928.445 kb on + strand, within CSW01_19025at 928.688 kb on + strand, within CSW01_19025at 928.740 kb on - strand, within CSW01_19025at 928.801 kb on + strand, within CSW01_19025at 929.226 kb on + strandat 929.226 kb on + strandat 929.234 kb on - strandat 929.267 kb on + strandat 929.267 kb on + strandat 929.275 kb on - strandat 929.302 kb on - strandat 929.319 kb on - strandat 929.344 kb on + strandat 929.352 kb on - strandat 929.407 kb on - strandat 929.407 kb on - strandat 929.541 kb on - strand, within CSW01_19030at 929.546 kb on - strand, within CSW01_19030at 929.641 kb on - strand, within CSW01_19030at 929.722 kb on + strand, within CSW01_19030at 929.730 kb on - strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.838 kb on + strand, within CSW01_19030at 929.895 kb on + strand, within CSW01_19030at 929.925 kb on - strand, within CSW01_19030at 929.983 kb on + strand, within CSW01_19030at 930.031 kb on - strand, within CSW01_19030at 930.049 kb on + strand, within CSW01_19030at 930.053 kb on - strand, within CSW01_19030at 930.062 kb on + strand, within CSW01_19030at 930.138 kb on - strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.199 kb on - strand, within CSW01_19030at 930.222 kb on + strand, within CSW01_19030at 930.242 kb on + strand, within CSW01_19030at 930.255 kb on - strand, within CSW01_19030at 930.330 kb on + strand, within CSW01_19030at 930.383 kb on + strand, within CSW01_19030at 930.447 kb on - strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.466 kb on - strand, within CSW01_19030at 930.480 kb on - strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.588 kb on - strand, within CSW01_19030at 930.630 kb on - strand, within CSW01_19030at 930.689 kb on + strand, within CSW01_19030at 930.700 kb on + strand, within CSW01_19030at 930.748 kb on - strand, within CSW01_19030at 930.827 kb on - strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.874 kb on + strandat 930.898 kb on + strandat 930.911 kb on - strandat 930.911 kb on - strandat 930.916 kb on - strandat 931.092 kb on + strandat 931.095 kb on - strandat 931.167 kb on + strandat 931.210 kb on - strandat 931.237 kb on + strand, within CSW01_19035at 931.237 kb on + strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.270 kb on + strand, within CSW01_19035at 931.278 kb on - strand, within CSW01_19035at 931.411 kb on + strand, within CSW01_19035at 931.470 kb on + strand, within CSW01_19035at 931.617 kb on + strand, within CSW01_19035at 931.630 kb on - strand, within CSW01_19035at 931.638 kb on + strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.735 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.843 kb on + strand, within CSW01_19035at 931.908 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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928,352 + CSW01_19025 0.19 -0.6
928,367 + CSW01_19025 0.20 +0.7
928,376 - CSW01_19025 0.21 -0.2
928,399 + CSW01_19025 0.24 +0.2
928,399 + CSW01_19025 0.24 -0.6
928,407 - CSW01_19025 0.25 -2.3
928,407 - CSW01_19025 0.25 +2.6
928,407 - CSW01_19025 0.25 +0.1
928,407 - CSW01_19025 0.25 +0.5
928,417 - CSW01_19025 0.26 +0.2
928,417 - CSW01_19025 0.26 +0.4
928,426 + CSW01_19025 0.27 +0.6
928,445 + CSW01_19025 0.29 +0.3
928,688 + CSW01_19025 0.56 +1.5
928,740 - CSW01_19025 0.62 +0.5
928,801 + CSW01_19025 0.68 -0.3
929,226 + +0.6
929,226 + +0.9
929,234 - -0.2
929,267 + +0.2
929,267 + +0.8
929,275 - +0.2
929,302 - +0.0
929,319 - +0.5
929,344 + -0.0
929,352 - +0.1
929,407 - -0.1
929,407 - -0.0
929,541 - CSW01_19030 0.17 -1.3
929,546 - CSW01_19030 0.18 +0.2
929,641 - CSW01_19030 0.23 -0.6
929,722 + CSW01_19030 0.28 +0.1
929,730 - CSW01_19030 0.28 +0.3
929,803 + CSW01_19030 0.32 +0.5
929,803 + CSW01_19030 0.32 +0.2
929,811 - CSW01_19030 0.33 -0.0
929,811 - CSW01_19030 0.33 +1.6
929,811 - CSW01_19030 0.33 +0.7
929,838 + CSW01_19030 0.34 -0.3
929,895 + CSW01_19030 0.38 -2.1
929,925 - CSW01_19030 0.39 +0.4
929,983 + CSW01_19030 0.43 -0.1
930,031 - CSW01_19030 0.45 -0.8
930,049 + CSW01_19030 0.46 -0.2
930,053 - CSW01_19030 0.47 -2.1
930,062 + CSW01_19030 0.47 +0.6
930,138 - CSW01_19030 0.52 -0.3
930,191 + CSW01_19030 0.55 +0.8
930,191 + CSW01_19030 0.55 -0.3
930,199 - CSW01_19030 0.55 +0.7
930,222 + CSW01_19030 0.56 +0.1
930,242 + CSW01_19030 0.58 -0.6
930,255 - CSW01_19030 0.58 -1.3
930,330 + CSW01_19030 0.63 -0.2
930,383 + CSW01_19030 0.66 -1.1
930,447 - CSW01_19030 0.69 -0.9
930,458 + CSW01_19030 0.70 +0.7
930,458 + CSW01_19030 0.70 -0.7
930,458 + CSW01_19030 0.70 +0.3
930,466 - CSW01_19030 0.70 +0.1
930,480 - CSW01_19030 0.71 -0.5
930,580 + CSW01_19030 0.77 +0.9
930,580 + CSW01_19030 0.77 +0.2
930,580 + CSW01_19030 0.77 -1.3
930,580 + CSW01_19030 0.77 -1.1
930,580 + CSW01_19030 0.77 +3.1
930,588 - CSW01_19030 0.77 +0.1
930,630 - CSW01_19030 0.80 -0.1
930,689 + CSW01_19030 0.83 +0.2
930,700 + CSW01_19030 0.84 -0.3
930,748 - CSW01_19030 0.86 +0.2
930,827 - +1.5
930,869 + -0.6
930,869 + +1.1
930,869 + -0.1
930,874 + -0.0
930,898 + +0.7
930,911 - -0.1
930,911 - +1.5
930,916 - -0.6
931,092 + -0.5
931,095 - +0.8
931,167 + +0.6
931,210 - +0.8
931,237 + CSW01_19035 0.11 +0.5
931,237 + CSW01_19035 0.11 +1.1
931,245 - CSW01_19035 0.12 +0.9
931,245 - CSW01_19035 0.12 -0.3
931,245 - CSW01_19035 0.12 +0.5
931,270 + CSW01_19035 0.14 -0.2
931,278 - CSW01_19035 0.15 -0.4
931,411 + CSW01_19035 0.27 +0.8
931,470 + CSW01_19035 0.32 +0.8
931,617 + CSW01_19035 0.45 -0.8
931,630 - CSW01_19035 0.46 +0.1
931,638 + CSW01_19035 0.47 -1.4
931,646 - CSW01_19035 0.47 -0.6
931,646 - CSW01_19035 0.47 +0.9
931,735 + CSW01_19035 0.55 -0.6
931,787 + CSW01_19035 0.60 +0.4
931,787 + CSW01_19035 0.60 +0.5
931,843 + CSW01_19035 0.65 -0.1
931,908 + CSW01_19035 0.70 +0.2
931,912 + CSW01_19035 0.71 +0.2
931,912 + CSW01_19035 0.71 -0.3
931,955 + CSW01_19035 0.75 +0.2
931,955 + CSW01_19035 0.75 -0.7

Or see this region's nucleotide sequence