Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18920

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18915 and CSW01_18920 overlap by 104 nucleotidesCSW01_18920 and CSW01_18925 are separated by 173 nucleotides CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389 _18915 CSW01_18920: CSW01_18920 - hypothetical protein, at 906,286 to 906,495 _18920 CSW01_18925: CSW01_18925 - sensor domain-containing diguanylate cyclase, at 906,669 to 908,042 _18925 Position (kb) 906 907Strain fitness (log2 ratio) -1 0 1 2 3at 905.358 kb on - strand, within CSW01_18915at 905.400 kb on + strand, within CSW01_18915at 905.407 kb on + strand, within CSW01_18915at 905.429 kb on + strand, within CSW01_18915at 905.430 kb on - strand, within CSW01_18915at 905.443 kb on + strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.475 kb on - strand, within CSW01_18915at 905.578 kb on + strand, within CSW01_18915at 905.591 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.757 kb on - strand, within CSW01_18915at 905.861 kb on + strand, within CSW01_18915at 905.874 kb on - strand, within CSW01_18915at 905.888 kb on + strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.989 kb on - strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.091 kb on + strand, within CSW01_18915at 906.165 kb on + strand, within CSW01_18915at 906.219 kb on + strand, within CSW01_18915at 906.284 kb on - strandat 906.297 kb on + strandat 906.425 kb on + strand, within CSW01_18920at 906.481 kb on + strandat 906.686 kb on + strandat 906.736 kb on - strandat 906.916 kb on + strand, within CSW01_18925at 906.916 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.123 kb on - strand, within CSW01_18925at 907.200 kb on + strand, within CSW01_18925at 907.442 kb on + strand, within CSW01_18925at 907.442 kb on + strand, within CSW01_18925

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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905,358 - CSW01_18915 0.32 +0.8
905,400 + CSW01_18915 0.35 +0.0
905,407 + CSW01_18915 0.35 -0.3
905,429 + CSW01_18915 0.37 -1.1
905,430 - CSW01_18915 0.37 -1.1
905,443 + CSW01_18915 0.38 +3.6
905,463 - CSW01_18915 0.39 +0.2
905,463 - CSW01_18915 0.39 -0.0
905,467 + CSW01_18915 0.39 +0.1
905,467 + CSW01_18915 0.39 +0.1
905,475 - CSW01_18915 0.40 +0.8
905,578 + CSW01_18915 0.47 +1.2
905,591 + CSW01_18915 0.47 +1.4
905,744 + CSW01_18915 0.57 +0.3
905,744 + CSW01_18915 0.57 -0.8
905,744 + CSW01_18915 0.57 +0.2
905,744 + CSW01_18915 0.57 +1.0
905,749 + CSW01_18915 0.58 +0.8
905,749 + CSW01_18915 0.58 +0.5
905,749 + CSW01_18915 0.58 -0.4
905,749 + CSW01_18915 0.58 -0.4
905,749 + CSW01_18915 0.58 +0.4
905,749 + CSW01_18915 0.58 +0.5
905,749 + CSW01_18915 0.58 -0.6
905,757 - CSW01_18915 0.58 -0.1
905,861 + CSW01_18915 0.65 +0.4
905,874 - CSW01_18915 0.66 +0.2
905,888 + CSW01_18915 0.67 -0.0
905,921 - CSW01_18915 0.69 +0.1
905,921 - CSW01_18915 0.69 +0.0
905,989 - CSW01_18915 0.74 +0.2
906,015 + CSW01_18915 0.75 +0.3
906,015 + CSW01_18915 0.75 +1.0
906,091 + CSW01_18915 0.80 +0.2
906,165 + CSW01_18915 0.85 +0.4
906,219 + CSW01_18915 0.89 +0.4
906,284 - -0.1
906,297 + -0.3
906,425 + CSW01_18920 0.66 +0.1
906,481 + +0.2
906,686 + +0.9
906,736 - +0.0
906,916 + CSW01_18925 0.18 +1.4
906,916 + CSW01_18925 0.18 +0.6
907,103 + CSW01_18925 0.32 +0.3
907,103 + CSW01_18925 0.32 +0.4
907,123 - CSW01_18925 0.33 +0.6
907,200 + CSW01_18925 0.39 +0.4
907,442 + CSW01_18925 0.56 +0.7
907,442 + CSW01_18925 0.56 +1.4

Or see this region's nucleotide sequence