Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18620

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18610 and CSW01_18615 are separated by 76 nucleotidesCSW01_18615 and CSW01_18620 are separated by 167 nucleotidesCSW01_18620 and CSW01_18625 are separated by 343 nucleotides CSW01_18610: CSW01_18610 - cytochrome b562 family protein, at 843,744 to 844,127 _18610 CSW01_18615: CSW01_18615 - phosphatase, at 844,204 to 844,950 _18615 CSW01_18620: CSW01_18620 - metal-dependent phosphohydrolase, at 845,118 to 848,063 _18620 CSW01_18625: CSW01_18625 - glucose-6-phosphate dehydrogenase, at 848,407 to 849,912 _18625 Position (kb) 845 846 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 844.139 kb on + strandat 844.139 kb on + strandat 844.141 kb on + strandat 844.147 kb on - strandat 844.149 kb on + strandat 844.149 kb on - strandat 844.151 kb on + strandat 844.161 kb on + strandat 844.222 kb on - strandat 844.233 kb on + strandat 844.299 kb on + strand, within CSW01_18615at 844.335 kb on + strand, within CSW01_18615at 844.384 kb on + strand, within CSW01_18615at 844.439 kb on - strand, within CSW01_18615at 844.450 kb on + strand, within CSW01_18615at 844.518 kb on - strand, within CSW01_18615at 844.552 kb on - strand, within CSW01_18615at 844.579 kb on + strand, within CSW01_18615at 844.599 kb on + strand, within CSW01_18615at 844.601 kb on + strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.614 kb on - strand, within CSW01_18615at 844.624 kb on - strand, within CSW01_18615at 844.730 kb on - strand, within CSW01_18615at 844.734 kb on - strand, within CSW01_18615at 844.746 kb on + strand, within CSW01_18615at 844.746 kb on + strand, within CSW01_18615at 844.754 kb on - strand, within CSW01_18615at 844.790 kb on - strand, within CSW01_18615at 844.830 kb on + strand, within CSW01_18615at 844.838 kb on + strand, within CSW01_18615at 844.888 kb on - strandat 844.895 kb on + strandat 844.895 kb on + strandat 844.913 kb on + strandat 844.943 kb on + strandat 844.983 kb on + strandat 844.983 kb on + strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.991 kb on - strandat 844.995 kb on + strandat 844.995 kb on + strandat 845.004 kb on - strandat 845.005 kb on - strandat 845.005 kb on - strandat 845.010 kb on + strandat 845.017 kb on + strandat 845.033 kb on - strandat 845.033 kb on - strandat 845.033 kb on - strandat 845.266 kb on + strandat 845.285 kb on + strandat 845.316 kb on - strandat 845.324 kb on - strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.367 kb on + strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.375 kb on - strandat 845.406 kb on + strandat 845.432 kb on + strand, within CSW01_18620at 845.449 kb on + strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.457 kb on - strand, within CSW01_18620at 845.586 kb on + strand, within CSW01_18620at 845.586 kb on + strand, within CSW01_18620at 845.594 kb on - strand, within CSW01_18620at 845.756 kb on - strand, within CSW01_18620at 845.779 kb on + strand, within CSW01_18620at 845.779 kb on + strand, within CSW01_18620at 845.780 kb on - strand, within CSW01_18620at 845.780 kb on - strand, within CSW01_18620at 845.784 kb on + strand, within CSW01_18620at 845.792 kb on - strand, within CSW01_18620at 845.806 kb on + strand, within CSW01_18620at 845.836 kb on + strand, within CSW01_18620at 845.844 kb on - strand, within CSW01_18620at 845.918 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.926 kb on + strand, within CSW01_18620at 845.932 kb on - strand, within CSW01_18620at 845.934 kb on - strand, within CSW01_18620at 845.983 kb on - strand, within CSW01_18620at 846.004 kb on - strand, within CSW01_18620at 846.045 kb on + strand, within CSW01_18620at 846.088 kb on + strand, within CSW01_18620at 846.120 kb on + strand, within CSW01_18620at 846.125 kb on + strand, within CSW01_18620at 846.410 kb on - strand, within CSW01_18620at 846.468 kb on + strand, within CSW01_18620at 846.468 kb on + strand, within CSW01_18620at 846.493 kb on - strand, within CSW01_18620at 846.513 kb on - strand, within CSW01_18620at 846.561 kb on + strand, within CSW01_18620at 846.567 kb on - strand, within CSW01_18620at 846.604 kb on + strand, within CSW01_18620at 846.604 kb on + strand, within CSW01_18620at 846.612 kb on - strand, within CSW01_18620at 846.633 kb on + strand, within CSW01_18620at 846.634 kb on - strand, within CSW01_18620at 846.698 kb on - strand, within CSW01_18620at 846.700 kb on - strand, within CSW01_18620at 846.702 kb on + strand, within CSW01_18620at 846.710 kb on - strand, within CSW01_18620at 846.710 kb on - strand, within CSW01_18620at 846.751 kb on - strand, within CSW01_18620at 846.798 kb on + strand, within CSW01_18620at 846.934 kb on + strand, within CSW01_18620at 846.936 kb on + strand, within CSW01_18620at 846.949 kb on + strand, within CSW01_18620at 847.030 kb on + strand, within CSW01_18620at 847.030 kb on + strand, within CSW01_18620at 847.030 kb on + strand, within CSW01_18620at 847.038 kb on - strand, within CSW01_18620at 847.038 kb on - strand, within CSW01_18620at 847.038 kb on - strand, within CSW01_18620at 847.038 kb on - strand, within CSW01_18620at 847.047 kb on + strand, within CSW01_18620at 847.050 kb on - strand, within CSW01_18620at 847.155 kb on + strand, within CSW01_18620at 847.165 kb on + strand, within CSW01_18620at 847.242 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.301 kb on + strand, within CSW01_18620at 847.309 kb on - strand, within CSW01_18620at 847.309 kb on - strand, within CSW01_18620at 847.315 kb on + strand, within CSW01_18620at 847.328 kb on - strand, within CSW01_18620at 847.335 kb on - strand, within CSW01_18620at 847.389 kb on - strand, within CSW01_18620at 847.411 kb on - strand, within CSW01_18620at 847.458 kb on - strand, within CSW01_18620at 847.567 kb on + strand, within CSW01_18620at 847.570 kb on - strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.656 kb on + strand, within CSW01_18620at 847.664 kb on - strand, within CSW01_18620at 847.665 kb on + strand, within CSW01_18620at 847.673 kb on - strand, within CSW01_18620at 847.681 kb on + strand, within CSW01_18620at 847.786 kb on - strandat 847.786 kb on - strandat 847.801 kb on - strandat 847.821 kb on + strandat 847.836 kb on - strandat 847.844 kb on - strandat 847.861 kb on - strandat 847.861 kb on - strandat 847.861 kb on - strandat 847.890 kb on + strandat 847.915 kb on + strandat 847.915 kb on + strandat 847.915 kb on + strandat 847.943 kb on + strandat 847.951 kb on - strandat 848.107 kb on - strandat 848.187 kb on + strandat 848.210 kb on - strandat 848.340 kb on - strandat 848.340 kb on - strandat 848.341 kb on - strandat 848.468 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.602 kb on - strand, within CSW01_18625at 848.604 kb on - strand, within CSW01_18625at 848.637 kb on - strand, within CSW01_18625at 848.637 kb on - strand, within CSW01_18625at 848.662 kb on + strand, within CSW01_18625at 848.672 kb on + strand, within CSW01_18625at 848.672 kb on + strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.721 kb on + strand, within CSW01_18625at 848.729 kb on - strand, within CSW01_18625at 848.743 kb on - strand, within CSW01_18625at 848.745 kb on + strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.757 kb on + strand, within CSW01_18625at 848.757 kb on + strand, within CSW01_18625at 848.765 kb on - strand, within CSW01_18625at 848.888 kb on + strand, within CSW01_18625at 848.945 kb on + strand, within CSW01_18625at 848.996 kb on - strand, within CSW01_18625

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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844,139 + -0.0
844,139 + -0.5
844,141 + +0.6
844,147 - -0.2
844,149 + -0.3
844,149 - +0.1
844,151 + +0.7
844,161 + -0.4
844,222 - -0.4
844,233 + -0.6
844,299 + CSW01_18615 0.13 -0.0
844,335 + CSW01_18615 0.18 +0.7
844,384 + CSW01_18615 0.24 -1.0
844,439 - CSW01_18615 0.31 +2.0
844,450 + CSW01_18615 0.33 +0.2
844,518 - CSW01_18615 0.42 -0.5
844,552 - CSW01_18615 0.47 +0.1
844,579 + CSW01_18615 0.50 +0.8
844,599 + CSW01_18615 0.53 +0.2
844,601 + CSW01_18615 0.53 +0.2
844,607 - CSW01_18615 0.54 -0.3
844,607 - CSW01_18615 0.54 +0.2
844,614 - CSW01_18615 0.55 +0.8
844,624 - CSW01_18615 0.56 +2.6
844,730 - CSW01_18615 0.70 -0.1
844,734 - CSW01_18615 0.71 +0.2
844,746 + CSW01_18615 0.73 +0.1
844,746 + CSW01_18615 0.73 +0.7
844,754 - CSW01_18615 0.74 -0.2
844,790 - CSW01_18615 0.78 +0.7
844,830 + CSW01_18615 0.84 +0.5
844,838 + CSW01_18615 0.85 +1.9
844,888 - +0.5
844,895 + +0.3
844,895 + -0.7
844,913 + -0.4
844,943 + +0.7
844,983 + -0.1
844,983 + +0.5
844,991 - +1.0
844,991 - -0.0
844,991 - +0.3
844,991 - -0.1
844,991 - -0.3
844,991 - +0.1
844,995 + +0.4
844,995 + +0.4
845,004 - +0.2
845,005 - +0.7
845,005 - +0.0
845,010 + -0.4
845,017 + +1.0
845,033 - +0.5
845,033 - -0.4
845,033 - -0.4
845,266 + +0.4
845,285 + +0.8
845,316 - +0.4
845,324 - +1.0
845,367 + +1.2
845,367 + -0.1
845,367 + +0.3
845,367 + +0.2
845,367 + +0.4
845,375 - +0.4
845,375 - +0.1
845,375 - +0.4
845,375 - +0.8
845,375 - +0.3
845,375 - -1.8
845,375 - -0.8
845,406 + +0.1
845,432 + CSW01_18620 0.11 +0.4
845,449 + CSW01_18620 0.11 +0.4
845,457 - CSW01_18620 0.12 +0.5
845,457 - CSW01_18620 0.12 +0.5
845,457 - CSW01_18620 0.12 -0.4
845,586 + CSW01_18620 0.16 +0.8
845,586 + CSW01_18620 0.16 -0.2
845,594 - CSW01_18620 0.16 +0.5
845,756 - CSW01_18620 0.22 +0.1
845,779 + CSW01_18620 0.22 +0.7
845,779 + CSW01_18620 0.22 +0.1
845,780 - CSW01_18620 0.22 +0.3
845,780 - CSW01_18620 0.22 -0.0
845,784 + CSW01_18620 0.23 +0.6
845,792 - CSW01_18620 0.23 +0.8
845,806 + CSW01_18620 0.23 -0.2
845,836 + CSW01_18620 0.24 +1.2
845,844 - CSW01_18620 0.25 +0.1
845,918 + CSW01_18620 0.27 +0.8
845,926 + CSW01_18620 0.27 +1.8
845,926 + CSW01_18620 0.27 +1.1
845,926 + CSW01_18620 0.27 +0.2
845,926 + CSW01_18620 0.27 +0.1
845,932 - CSW01_18620 0.28 +1.0
845,934 - CSW01_18620 0.28 +0.2
845,983 - CSW01_18620 0.29 +0.7
846,004 - CSW01_18620 0.30 +1.3
846,045 + CSW01_18620 0.31 +0.6
846,088 + CSW01_18620 0.33 +0.0
846,120 + CSW01_18620 0.34 -0.6
846,125 + CSW01_18620 0.34 +0.7
846,410 - CSW01_18620 0.44 -0.1
846,468 + CSW01_18620 0.46 -0.2
846,468 + CSW01_18620 0.46 +0.4
846,493 - CSW01_18620 0.47 +0.4
846,513 - CSW01_18620 0.47 +0.6
846,561 + CSW01_18620 0.49 +0.8
846,567 - CSW01_18620 0.49 +0.9
846,604 + CSW01_18620 0.50 -0.8
846,604 + CSW01_18620 0.50 +0.3
846,612 - CSW01_18620 0.51 +0.6
846,633 + CSW01_18620 0.51 +0.9
846,634 - CSW01_18620 0.51 -0.3
846,698 - CSW01_18620 0.54 -0.4
846,700 - CSW01_18620 0.54 -0.0
846,702 + CSW01_18620 0.54 +0.2
846,710 - CSW01_18620 0.54 -0.1
846,710 - CSW01_18620 0.54 +0.8
846,751 - CSW01_18620 0.55 +0.5
846,798 + CSW01_18620 0.57 +0.9
846,934 + CSW01_18620 0.62 +0.3
846,936 + CSW01_18620 0.62 +1.1
846,949 + CSW01_18620 0.62 +0.4
847,030 + CSW01_18620 0.65 +0.5
847,030 + CSW01_18620 0.65 +0.3
847,030 + CSW01_18620 0.65 +0.2
847,038 - CSW01_18620 0.65 +0.1
847,038 - CSW01_18620 0.65 +0.6
847,038 - CSW01_18620 0.65 -0.1
847,038 - CSW01_18620 0.65 +0.2
847,047 + CSW01_18620 0.65 +0.4
847,050 - CSW01_18620 0.66 +1.6
847,155 + CSW01_18620 0.69 +1.6
847,165 + CSW01_18620 0.69 +0.4
847,242 + CSW01_18620 0.72 +0.2
847,301 + CSW01_18620 0.74 +1.0
847,301 + CSW01_18620 0.74 +1.1
847,301 + CSW01_18620 0.74 +0.4
847,301 + CSW01_18620 0.74 +0.5
847,301 + CSW01_18620 0.74 +0.2
847,301 + CSW01_18620 0.74 -0.4
847,309 - CSW01_18620 0.74 +0.1
847,309 - CSW01_18620 0.74 +0.4
847,315 + CSW01_18620 0.75 -1.0
847,328 - CSW01_18620 0.75 +0.0
847,335 - CSW01_18620 0.75 +0.6
847,389 - CSW01_18620 0.77 +0.2
847,411 - CSW01_18620 0.78 +1.2
847,458 - CSW01_18620 0.79 +1.9
847,567 + CSW01_18620 0.83 +0.4
847,570 - CSW01_18620 0.83 +2.6
847,586 + CSW01_18620 0.84 -0.8
847,586 + CSW01_18620 0.84 +0.3
847,586 + CSW01_18620 0.84 +0.4
847,656 + CSW01_18620 0.86 +0.3
847,664 - CSW01_18620 0.86 +0.7
847,665 + CSW01_18620 0.86 +1.2
847,673 - CSW01_18620 0.87 +0.4
847,681 + CSW01_18620 0.87 +0.7
847,786 - -0.3
847,786 - +0.4
847,801 - +0.2
847,821 + +1.3
847,836 - +1.1
847,844 - +1.1
847,861 - +0.5
847,861 - -1.0
847,861 - -0.4
847,890 + +0.1
847,915 + +0.3
847,915 + +0.0
847,915 + +0.6
847,943 + +1.0
847,951 - +1.2
848,107 - +0.3
848,187 + -0.7
848,210 - +0.0
848,340 - +1.6
848,340 - +0.3
848,341 - +0.7
848,468 + +0.1
848,496 + +0.3
848,496 + +0.2
848,496 + +0.1
848,496 + -0.2
848,602 - CSW01_18625 0.13 +0.6
848,604 - CSW01_18625 0.13 +0.4
848,637 - CSW01_18625 0.15 +1.3
848,637 - CSW01_18625 0.15 +0.7
848,662 + CSW01_18625 0.17 -0.4
848,672 + CSW01_18625 0.18 -0.3
848,672 + CSW01_18625 0.18 +0.7
848,680 - CSW01_18625 0.18 +0.4
848,680 - CSW01_18625 0.18 -2.0
848,680 - CSW01_18625 0.18 +0.2
848,721 + CSW01_18625 0.21 +0.7
848,729 - CSW01_18625 0.21 -0.6
848,743 - CSW01_18625 0.22 +1.4
848,745 + CSW01_18625 0.22 +0.2
848,753 - CSW01_18625 0.23 -0.0
848,753 - CSW01_18625 0.23 +0.6
848,753 - CSW01_18625 0.23 -0.0
848,757 + CSW01_18625 0.23 +0.4
848,757 + CSW01_18625 0.23 +0.5
848,765 - CSW01_18625 0.24 -0.2
848,888 + CSW01_18625 0.32 +1.5
848,945 + CSW01_18625 0.36 +0.5
848,996 - CSW01_18625 0.39 +0.1

Or see this region's nucleotide sequence