Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18360 and CSW01_18365 are separated by 48 nucleotides CSW01_18365 and CSW01_18370 are separated by 185 nucleotides CSW01_18370 and CSW01_18375 are separated by 42 nucleotides
CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968
_18360
CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631
_18365
CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061
_18370
CSW01_18375: CSW01_18375 - GGDEF domain-containing protein, at 788,104 to 789,084
_18375
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -1
0
1
2 at 785.984 kb on + strand at 785.991 kb on - strand at 785.991 kb on - strand at 785.995 kb on + strand at 786.003 kb on - strand at 786.003 kb on - strand at 786.014 kb on + strand at 786.014 kb on + strand at 786.022 kb on - strand at 786.060 kb on + strand at 786.131 kb on - strand, within CSW01_18365 at 786.240 kb on + strand, within CSW01_18365 at 786.301 kb on + strand, within CSW01_18365 at 786.411 kb on + strand, within CSW01_18365 at 786.419 kb on + strand, within CSW01_18365 at 786.464 kb on + strand, within CSW01_18365 at 786.566 kb on - strand, within CSW01_18365 at 786.884 kb on + strand at 786.944 kb on + strand, within CSW01_18370 at 786.982 kb on + strand, within CSW01_18370 at 786.982 kb on + strand, within CSW01_18370 at 786.990 kb on - strand, within CSW01_18370 at 786.990 kb on - strand, within CSW01_18370 at 786.990 kb on - strand, within CSW01_18370 at 786.990 kb on - strand, within CSW01_18370 at 786.990 kb on - strand, within CSW01_18370 at 787.052 kb on + strand, within CSW01_18370 at 787.088 kb on - strand, within CSW01_18370 at 787.126 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.153 kb on + strand, within CSW01_18370 at 787.155 kb on - strand, within CSW01_18370 at 787.168 kb on + strand, within CSW01_18370 at 787.346 kb on + strand, within CSW01_18370 at 787.420 kb on - strand, within CSW01_18370 at 787.542 kb on - strand, within CSW01_18370 at 787.556 kb on - strand, within CSW01_18370 at 787.592 kb on + strand, within CSW01_18370 at 787.594 kb on + strand, within CSW01_18370 at 787.594 kb on + strand, within CSW01_18370 at 787.621 kb on + strand, within CSW01_18370 at 787.621 kb on + strand, within CSW01_18370 at 787.767 kb on - strand, within CSW01_18370 at 787.795 kb on - strand, within CSW01_18370 at 787.961 kb on + strand at 787.969 kb on - strand at 787.969 kb on - strand at 787.988 kb on + strand at 787.996 kb on - strand at 787.996 kb on - strand at 788.056 kb on + strand at 788.056 kb on + strand at 788.064 kb on - strand at 788.064 kb on - strand at 788.169 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.172 kb on + strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.223 kb on - strand, within CSW01_18375 at 788.257 kb on - strand, within CSW01_18375 at 788.267 kb on - strand, within CSW01_18375 at 788.370 kb on + strand, within CSW01_18375 at 788.494 kb on - strand, within CSW01_18375 at 788.539 kb on - strand, within CSW01_18375 at 788.539 kb on - strand, within CSW01_18375 at 788.605 kb on + strand, within CSW01_18375 at 788.739 kb on + strand, within CSW01_18375 at 788.746 kb on + strand, within CSW01_18375 at 788.747 kb on - strand, within CSW01_18375 at 788.948 kb on - strand, within CSW01_18375 at 788.956 kb on - strand, within CSW01_18375
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 785,984 + -1.4 785,991 - -0.2 785,991 - -0.7 785,995 + +1.0 786,003 - +0.1 786,003 - +0.1 786,014 + +1.1 786,014 + -0.4 786,022 - -0.3 786,060 + -0.7 786,131 - CSW01_18365 0.19 +0.5 786,240 + CSW01_18365 0.36 -0.1 786,301 + CSW01_18365 0.46 +1.1 786,411 + CSW01_18365 0.64 +0.2 786,419 + CSW01_18365 0.65 +0.7 786,464 + CSW01_18365 0.73 -1.4 786,566 - CSW01_18365 0.89 +0.3 786,884 + -0.6 786,944 + CSW01_18370 0.10 +0.4 786,982 + CSW01_18370 0.13 +0.8 786,982 + CSW01_18370 0.13 +0.9 786,990 - CSW01_18370 0.14 +0.1 786,990 - CSW01_18370 0.14 +0.4 786,990 - CSW01_18370 0.14 -1.6 786,990 - CSW01_18370 0.14 +0.3 786,990 - CSW01_18370 0.14 -0.2 787,052 + CSW01_18370 0.19 +0.8 787,088 - CSW01_18370 0.22 +0.7 787,126 + CSW01_18370 0.25 +1.6 787,153 + CSW01_18370 0.27 -0.8 787,153 + CSW01_18370 0.27 +0.5 787,153 + CSW01_18370 0.27 -1.3 787,155 - CSW01_18370 0.27 -0.5 787,168 + CSW01_18370 0.28 -1.4 787,346 + CSW01_18370 0.42 +0.1 787,420 - CSW01_18370 0.48 +0.1 787,542 - CSW01_18370 0.58 +0.9 787,556 - CSW01_18370 0.59 +0.0 787,592 + CSW01_18370 0.62 +0.7 787,594 + CSW01_18370 0.62 +0.4 787,594 + CSW01_18370 0.62 -0.5 787,621 + CSW01_18370 0.65 +0.9 787,621 + CSW01_18370 0.65 +0.1 787,767 - CSW01_18370 0.76 +1.1 787,795 - CSW01_18370 0.79 +2.2 787,961 + +1.1 787,969 - -0.5 787,969 - -0.2 787,988 + -0.1 787,996 - +0.4 787,996 - -0.6 788,056 + +1.0 788,056 + +0.7 788,064 - +0.3 788,064 - +1.0 788,169 + +1.1 788,172 + +1.7 788,172 + +1.3 788,172 + +1.8 788,172 + -0.5 788,172 + +0.3 788,172 + -0.3 788,172 + +0.0 788,180 - -0.3 788,180 - -0.4 788,223 - CSW01_18375 0.12 +1.3 788,257 - CSW01_18375 0.16 +0.7 788,267 - CSW01_18375 0.17 -0.8 788,370 + CSW01_18375 0.27 -0.3 788,494 - CSW01_18375 0.40 +1.0 788,539 - CSW01_18375 0.44 +0.2 788,539 - CSW01_18375 0.44 +0.7 788,605 + CSW01_18375 0.51 +0.3 788,739 + CSW01_18375 0.65 -0.1 788,746 + CSW01_18375 0.65 -0.1 788,747 - CSW01_18375 0.66 -0.1 788,948 - CSW01_18375 0.86 -0.2 788,956 - CSW01_18375 0.87 +0.8
Or see this region's nucleotide sequence