Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18025 and CSW01_18030 are separated by 36 nucleotides CSW01_18030 and CSW01_18035 are separated by 363 nucleotides CSW01_18035 and CSW01_18040 are separated by 227 nucleotides
CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519
_18025
CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675
_18030
CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241
_18035
CSW01_18040: CSW01_18040 - methyl-accepting chemotaxis protein, at 713,469 to 714,890
_18040
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1
2 at 711.041 kb on + strand, within CSW01_18025 at 711.041 kb on + strand, within CSW01_18025 at 711.069 kb on + strand, within CSW01_18025 at 711.074 kb on + strand, within CSW01_18025 at 711.079 kb on + strand, within CSW01_18025 at 711.082 kb on - strand, within CSW01_18025 at 711.100 kb on + strand, within CSW01_18025 at 711.124 kb on + strand, within CSW01_18025 at 711.199 kb on + strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.260 kb on - strand, within CSW01_18025 at 711.285 kb on + strand, within CSW01_18025 at 711.372 kb on + strand, within CSW01_18025 at 711.385 kb on + strand, within CSW01_18025 at 711.587 kb on - strand, within CSW01_18030 at 711.637 kb on - strand, within CSW01_18030 at 711.639 kb on + strand, within CSW01_18030 at 711.647 kb on - strand, within CSW01_18030 at 711.683 kb on - strand at 711.683 kb on - strand at 711.710 kb on + strand at 711.737 kb on + strand at 711.761 kb on - strand at 711.767 kb on + strand at 711.817 kb on - strand at 712.284 kb on - strand, within CSW01_18035 at 712.471 kb on - strand, within CSW01_18035 at 712.500 kb on + strand, within CSW01_18035 at 712.551 kb on + strand, within CSW01_18035 at 712.559 kb on - strand, within CSW01_18035 at 712.673 kb on + strand, within CSW01_18035 at 712.673 kb on + strand, within CSW01_18035 at 712.673 kb on + strand, within CSW01_18035 at 712.673 kb on + strand, within CSW01_18035 at 712.673 kb on + strand, within CSW01_18035 at 712.681 kb on - strand, within CSW01_18035 at 712.681 kb on - strand, within CSW01_18035 at 712.748 kb on + strand, within CSW01_18035 at 712.748 kb on + strand, within CSW01_18035 at 712.781 kb on + strand, within CSW01_18035 at 712.812 kb on + strand, within CSW01_18035 at 712.831 kb on - strand, within CSW01_18035 at 712.873 kb on + strand, within CSW01_18035 at 712.909 kb on - strand, within CSW01_18035 at 713.018 kb on - strand, within CSW01_18035 at 713.048 kb on - strand, within CSW01_18035 at 713.130 kb on - strand at 713.136 kb on + strand at 713.178 kb on - strand at 713.208 kb on + strand at 713.252 kb on + strand at 713.254 kb on + strand at 713.260 kb on - strand at 713.455 kb on + strand at 713.599 kb on + strand at 713.607 kb on - strand at 713.609 kb on - strand at 713.621 kb on + strand, within CSW01_18040 at 713.674 kb on - strand, within CSW01_18040 at 713.771 kb on + strand, within CSW01_18040 at 713.774 kb on - strand, within CSW01_18040 at 713.779 kb on - strand, within CSW01_18040 at 713.780 kb on - strand, within CSW01_18040 at 713.829 kb on - strand, within CSW01_18040 at 714.020 kb on + strand, within CSW01_18040 at 714.063 kb on + strand, within CSW01_18040 at 714.071 kb on - strand, within CSW01_18040 at 714.073 kb on + strand, within CSW01_18040 at 714.073 kb on + strand, within CSW01_18040 at 714.079 kb on + strand, within CSW01_18040
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 711,041 + CSW01_18025 0.18 -1.0 711,041 + CSW01_18025 0.18 +0.3 711,069 + CSW01_18025 0.23 -0.2 711,074 + CSW01_18025 0.23 +0.9 711,079 + CSW01_18025 0.24 +0.3 711,082 - CSW01_18025 0.25 +0.2 711,100 + CSW01_18025 0.28 +0.8 711,124 + CSW01_18025 0.32 +0.3 711,199 + CSW01_18025 0.45 +0.0 711,207 - CSW01_18025 0.46 -0.4 711,207 - CSW01_18025 0.46 -0.6 711,260 - CSW01_18025 0.55 +1.4 711,285 + CSW01_18025 0.60 -0.1 711,372 + CSW01_18025 0.75 +0.1 711,385 + CSW01_18025 0.77 +0.2 711,587 - CSW01_18030 0.26 -0.7 711,637 - CSW01_18030 0.68 -0.1 711,639 + CSW01_18030 0.69 -0.1 711,647 - CSW01_18030 0.76 +0.6 711,683 - +0.1 711,683 - -0.0 711,710 + +0.2 711,737 + -0.1 711,761 - +0.5 711,767 + +0.4 711,817 - +0.0 712,284 - CSW01_18035 0.20 +0.5 712,471 - CSW01_18035 0.36 +0.3 712,500 + CSW01_18035 0.38 +0.8 712,551 + CSW01_18035 0.43 +0.0 712,559 - CSW01_18035 0.43 -0.9 712,673 + CSW01_18035 0.53 +1.9 712,673 + CSW01_18035 0.53 -0.6 712,673 + CSW01_18035 0.53 -1.0 712,673 + CSW01_18035 0.53 +0.8 712,673 + CSW01_18035 0.53 +0.4 712,681 - CSW01_18035 0.53 -0.3 712,681 - CSW01_18035 0.53 +0.3 712,748 + CSW01_18035 0.59 +0.3 712,748 + CSW01_18035 0.59 +0.2 712,781 + CSW01_18035 0.62 -0.2 712,812 + CSW01_18035 0.64 -0.7 712,831 - CSW01_18035 0.66 +1.6 712,873 + CSW01_18035 0.69 -1.4 712,909 - CSW01_18035 0.72 -1.1 713,018 - CSW01_18035 0.81 +1.0 713,048 - CSW01_18035 0.84 -0.7 713,130 - +0.6 713,136 + +0.3 713,178 - +1.0 713,208 + +0.0 713,252 + -0.7 713,254 + +0.6 713,260 - -0.4 713,455 + -1.2 713,599 + +0.2 713,607 - -0.9 713,609 - -0.2 713,621 + CSW01_18040 0.11 +2.4 713,674 - CSW01_18040 0.14 +1.2 713,771 + CSW01_18040 0.21 +1.0 713,774 - CSW01_18040 0.21 +0.1 713,779 - CSW01_18040 0.22 +0.3 713,780 - CSW01_18040 0.22 +1.8 713,829 - CSW01_18040 0.25 +2.3 714,020 + CSW01_18040 0.39 -0.0 714,063 + CSW01_18040 0.42 +0.3 714,071 - CSW01_18040 0.42 -0.6 714,073 + CSW01_18040 0.42 +0.3 714,073 + CSW01_18040 0.42 -0.4 714,079 + CSW01_18040 0.43 +0.0
Or see this region's nucleotide sequence