Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17970 and CSW01_17975 are separated by 1 nucleotides CSW01_17975 and CSW01_17980 are separated by 73 nucleotides CSW01_17980 and CSW01_17985 are separated by 295 nucleotides CSW01_17985 and CSW01_17990 are separated by 223 nucleotides
CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135
_17970
CSW01_17975: CSW01_17975 - arginine ABC transporter substrate-binding protein, at 701,137 to 701,868
_17975
CSW01_17980: CSW01_17980 - arginine ABC transporter ATP-binding protein ArtP, at 701,942 to 702,670
_17980
CSW01_17985: CSW01_17985 - tRNA-Cys, at 702,966 to 703,039
_17985
CSW01_17990: CSW01_17990 - ATPase RavA stimulator ViaA, at 703,263 to 704,708
_17990
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1
2 at 701.106 kb on - strand at 701.108 kb on + strand at 701.118 kb on - strand at 701.124 kb on - strand at 701.200 kb on - strand at 701.204 kb on + strand at 701.204 kb on + strand at 701.204 kb on + strand at 701.204 kb on + strand at 701.212 kb on - strand, within CSW01_17975 at 701.221 kb on - strand, within CSW01_17975 at 701.316 kb on - strand, within CSW01_17975 at 701.318 kb on + strand, within CSW01_17975 at 701.319 kb on + strand, within CSW01_17975 at 701.326 kb on - strand, within CSW01_17975 at 701.418 kb on - strand, within CSW01_17975 at 701.502 kb on - strand, within CSW01_17975 at 701.580 kb on + strand, within CSW01_17975 at 701.588 kb on - strand, within CSW01_17975 at 701.653 kb on - strand, within CSW01_17975 at 701.659 kb on + strand, within CSW01_17975 at 701.735 kb on + strand, within CSW01_17975 at 701.757 kb on - strand, within CSW01_17975 at 701.761 kb on + strand, within CSW01_17975 at 701.875 kb on + strand at 701.904 kb on + strand at 701.947 kb on + strand at 701.947 kb on + strand at 701.955 kb on - strand at 701.992 kb on - strand at 701.996 kb on - strand at 702.005 kb on + strand at 702.005 kb on + strand at 702.248 kb on - strand, within CSW01_17980 at 702.253 kb on - strand, within CSW01_17980 at 702.266 kb on + strand, within CSW01_17980 at 702.421 kb on + strand, within CSW01_17980 at 702.433 kb on + strand, within CSW01_17980 at 702.441 kb on - strand, within CSW01_17980 at 702.441 kb on - strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.545 kb on + strand, within CSW01_17980 at 702.553 kb on - strand, within CSW01_17980 at 702.804 kb on + strand at 702.804 kb on + strand at 703.156 kb on + strand at 703.197 kb on - strand at 703.210 kb on + strand at 703.475 kb on + strand, within CSW01_17990 at 703.572 kb on + strand, within CSW01_17990 at 703.620 kb on - strand, within CSW01_17990 at 703.620 kb on - strand, within CSW01_17990
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 701,106 - +0.0 701,108 + +2.3 701,118 - -1.0 701,124 - -0.2 701,200 - +0.0 701,204 + +1.5 701,204 + -1.2 701,204 + -0.3 701,204 + +0.6 701,212 - CSW01_17975 0.10 -0.3 701,221 - CSW01_17975 0.11 +0.1 701,316 - CSW01_17975 0.24 +1.0 701,318 + CSW01_17975 0.25 +0.5 701,319 + CSW01_17975 0.25 +0.5 701,326 - CSW01_17975 0.26 +0.2 701,418 - CSW01_17975 0.38 -0.5 701,502 - CSW01_17975 0.50 -0.2 701,580 + CSW01_17975 0.61 -0.7 701,588 - CSW01_17975 0.62 +0.6 701,653 - CSW01_17975 0.70 -0.6 701,659 + CSW01_17975 0.71 -0.6 701,735 + CSW01_17975 0.82 -0.1 701,757 - CSW01_17975 0.85 +0.1 701,761 + CSW01_17975 0.85 +0.8 701,875 + -0.2 701,904 + -0.3 701,947 + +0.5 701,947 + -1.8 701,955 - +0.1 701,992 - +0.9 701,996 - +0.7 702,005 + +0.1 702,005 + -0.0 702,248 - CSW01_17980 0.42 +0.1 702,253 - CSW01_17980 0.43 -0.9 702,266 + CSW01_17980 0.44 +0.6 702,421 + CSW01_17980 0.66 +0.5 702,433 + CSW01_17980 0.67 +0.5 702,441 - CSW01_17980 0.68 +1.0 702,441 - CSW01_17980 0.68 +0.9 702,545 + CSW01_17980 0.83 +0.1 702,545 + CSW01_17980 0.83 +1.4 702,545 + CSW01_17980 0.83 +0.2 702,553 - CSW01_17980 0.84 +0.4 702,804 + -1.0 702,804 + +0.4 703,156 + +0.8 703,197 - -1.2 703,210 + +1.8 703,475 + CSW01_17990 0.15 -0.3 703,572 + CSW01_17990 0.21 +1.4 703,620 - CSW01_17990 0.25 -1.3 703,620 - CSW01_17990 0.25 -0.4
Or see this region's nucleotide sequence