Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17660 and CSW01_17665 are separated by 71 nucleotides CSW01_17665 and CSW01_17670 are separated by 76 nucleotides CSW01_17670 and CSW01_17675 are separated by 357 nucleotides
CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658
_17660
CSW01_17665: CSW01_17665 - hypothetical protein, at 631,730 to 632,185
_17665
CSW01_17670: CSW01_17670 - hypothetical protein, at 632,262 to 632,933
_17670
CSW01_17675: CSW01_17675 - GGDEF domain-containing protein, at 633,291 to 635,219
_17675
Position (kb) 632
633 Strain fitness (log2 ratio) -1
0
1
2
3 at 631.334 kb on - strand, within CSW01_17660 at 631.345 kb on + strand, within CSW01_17660 at 631.553 kb on + strand at 631.769 kb on - strand at 631.769 kb on - strand at 631.936 kb on + strand, within CSW01_17665 at 632.023 kb on - strand, within CSW01_17665 at 632.130 kb on + strand, within CSW01_17665 at 632.130 kb on + strand, within CSW01_17665 at 632.154 kb on + strand at 632.188 kb on - strand at 632.227 kb on - strand at 632.239 kb on - strand at 632.309 kb on - strand at 632.309 kb on - strand at 632.324 kb on - strand at 632.324 kb on - strand at 632.324 kb on - strand at 632.333 kb on + strand, within CSW01_17670 at 632.354 kb on + strand, within CSW01_17670 at 632.354 kb on + strand, within CSW01_17670 at 632.568 kb on - strand, within CSW01_17670 at 632.568 kb on - strand, within CSW01_17670 at 632.717 kb on + strand, within CSW01_17670 at 632.796 kb on - strand, within CSW01_17670 at 632.823 kb on + strand, within CSW01_17670 at 632.844 kb on + strand, within CSW01_17670 at 633.298 kb on + strand at 633.298 kb on + strand at 633.342 kb on + strand at 633.344 kb on - strand at 633.351 kb on - strand at 633.408 kb on - strand at 633.434 kb on + strand at 633.460 kb on - strand at 633.488 kb on + strand, within CSW01_17675 at 633.528 kb on + strand, within CSW01_17675 at 633.573 kb on + strand, within CSW01_17675 at 633.574 kb on - strand, within CSW01_17675 at 633.581 kb on - strand, within CSW01_17675 at 633.605 kb on - strand, within CSW01_17675 at 633.608 kb on + strand, within CSW01_17675 at 633.616 kb on - strand, within CSW01_17675 at 633.624 kb on + strand, within CSW01_17675 at 633.745 kb on + strand, within CSW01_17675 at 633.753 kb on - strand, within CSW01_17675 at 633.796 kb on - strand, within CSW01_17675 at 633.852 kb on - strand, within CSW01_17675 at 633.899 kb on - strand, within CSW01_17675
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 631,334 - CSW01_17660 0.82 +0.0 631,345 + CSW01_17660 0.83 +0.1 631,553 + +0.7 631,769 - +0.1 631,769 - +0.5 631,936 + CSW01_17665 0.45 +0.1 632,023 - CSW01_17665 0.64 -0.2 632,130 + CSW01_17665 0.88 +0.1 632,130 + CSW01_17665 0.88 -0.7 632,154 + +0.8 632,188 - +0.2 632,227 - -0.2 632,239 - +1.0 632,309 - +3.0 632,309 - +0.8 632,324 - +0.5 632,324 - +0.2 632,324 - +1.0 632,333 + CSW01_17670 0.11 +0.6 632,354 + CSW01_17670 0.14 +0.5 632,354 + CSW01_17670 0.14 +0.7 632,568 - CSW01_17670 0.46 -0.5 632,568 - CSW01_17670 0.46 +0.4 632,717 + CSW01_17670 0.68 +0.2 632,796 - CSW01_17670 0.79 +0.3 632,823 + CSW01_17670 0.83 +0.5 632,844 + CSW01_17670 0.87 +0.3 633,298 + +0.4 633,298 + -0.3 633,342 + +0.8 633,344 - +0.2 633,351 - +0.4 633,408 - +0.2 633,434 + -0.7 633,460 - -0.2 633,488 + CSW01_17675 0.10 +0.5 633,528 + CSW01_17675 0.12 -1.1 633,573 + CSW01_17675 0.15 +0.7 633,574 - CSW01_17675 0.15 +0.5 633,581 - CSW01_17675 0.15 +0.2 633,605 - CSW01_17675 0.16 -0.6 633,608 + CSW01_17675 0.16 +1.0 633,616 - CSW01_17675 0.17 +0.8 633,624 + CSW01_17675 0.17 +0.2 633,745 + CSW01_17675 0.24 +0.6 633,753 - CSW01_17675 0.24 +0.3 633,796 - CSW01_17675 0.26 +2.0 633,852 - CSW01_17675 0.29 +0.4 633,899 - CSW01_17675 0.32 -0.5
Or see this region's nucleotide sequence