Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17320

Experiment: LB_Anaerobic_18HR_ZN20A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17315 and CSW01_17320 overlap by 2 nucleotidesCSW01_17320 and CSW01_17325 are separated by 483 nucleotides CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704 _17315 CSW01_17320: CSW01_17320 - hypothetical protein, at 554,703 to 554,813 _17320 CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247 _17325 Position (kb) 554 555Strain fitness (log2 ratio) -1 0 1 2 3at 553.749 kb on - strandat 553.822 kb on - strand, within CSW01_17315at 553.838 kb on + strand, within CSW01_17315at 554.106 kb on - strand, within CSW01_17315at 554.108 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.300 kb on + strand, within CSW01_17315at 554.340 kb on - strand, within CSW01_17315at 554.352 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.481 kb on + strand, within CSW01_17315at 554.489 kb on - strand, within CSW01_17315at 554.612 kb on + strandat 554.620 kb on + strandat 554.665 kb on + strandat 554.727 kb on + strand, within CSW01_17320at 554.744 kb on + strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.752 kb on - strand, within CSW01_17320at 554.879 kb on - strandat 554.879 kb on - strandat 554.882 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.173 kb on + strandat 555.250 kb on + strandat 555.395 kb on + strand, within CSW01_17325at 555.395 kb on + strand, within CSW01_17325at 555.413 kb on + strand, within CSW01_17325at 555.440 kb on - strand, within CSW01_17325at 555.444 kb on + strand, within CSW01_17325at 555.459 kb on + strand, within CSW01_17325at 555.504 kb on + strand, within CSW01_17325at 555.512 kb on - strand, within CSW01_17325at 555.514 kb on + strand, within CSW01_17325at 555.751 kb on + strand, within CSW01_17325at 555.765 kb on + strand, within CSW01_17325at 555.767 kb on + strand, within CSW01_17325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
remove
553,749 - -0.0
553,822 - CSW01_17315 0.11 +0.7
553,838 + CSW01_17315 0.13 +0.0
554,106 - CSW01_17315 0.40 -0.7
554,108 + CSW01_17315 0.40 +1.1
554,232 + CSW01_17315 0.53 +0.9
554,232 + CSW01_17315 0.53 -0.5
554,232 + CSW01_17315 0.53 +0.4
554,232 + CSW01_17315 0.53 +2.8
554,232 + CSW01_17315 0.53 -0.9
554,232 + CSW01_17315 0.53 +0.4
554,232 + CSW01_17315 0.53 -0.1
554,232 + CSW01_17315 0.53 +0.3
554,232 + CSW01_17315 0.53 +0.6
554,240 - CSW01_17315 0.53 +0.3
554,240 - CSW01_17315 0.53 +0.1
554,240 - CSW01_17315 0.53 -0.3
554,240 - CSW01_17315 0.53 -0.1
554,240 - CSW01_17315 0.53 +0.5
554,240 - CSW01_17315 0.53 +0.4
554,240 - CSW01_17315 0.53 +0.1
554,240 - CSW01_17315 0.53 +0.9
554,300 + CSW01_17315 0.59 -0.7
554,340 - CSW01_17315 0.63 +0.5
554,352 - CSW01_17315 0.65 +0.4
554,420 - CSW01_17315 0.71 -0.8
554,420 - CSW01_17315 0.71 -0.4
554,481 + CSW01_17315 0.78 -0.1
554,489 - CSW01_17315 0.78 +0.3
554,612 + +0.9
554,620 + +0.3
554,665 + +0.3
554,727 + CSW01_17320 0.22 +0.3
554,744 + CSW01_17320 0.37 +0.5
554,750 - CSW01_17320 0.42 +0.8
554,750 - CSW01_17320 0.42 +0.3
554,752 - CSW01_17320 0.44 +0.9
554,879 - -0.1
554,879 - +0.1
554,882 + -0.9
555,085 + +0.4
555,085 + -0.6
555,085 + -0.1
555,085 + -0.2
555,085 + -0.2
555,085 + +0.8
555,085 + +1.3
555,085 + +0.5
555,085 + +1.4
555,093 - +0.2
555,093 - -0.9
555,093 - +0.5
555,093 - -0.1
555,173 + +1.3
555,250 + +0.6
555,395 + CSW01_17325 0.10 +0.1
555,395 + CSW01_17325 0.10 -0.6
555,413 + CSW01_17325 0.12 -0.3
555,440 - CSW01_17325 0.15 +0.5
555,444 + CSW01_17325 0.15 -0.6
555,459 + CSW01_17325 0.17 -0.3
555,504 + CSW01_17325 0.22 +0.5
555,512 - CSW01_17325 0.23 +0.4
555,514 + CSW01_17325 0.23 +0.4
555,751 + CSW01_17325 0.48 -1.1
555,765 + CSW01_17325 0.49 +0.6
555,767 + CSW01_17325 0.49 -0.2

Or see this region's nucleotide sequence