Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17015 and CSW01_17020 are separated by 74 nucleotides CSW01_17020 and CSW01_17025 overlap by 4 nucleotides
CSW01_17015: CSW01_17015 - gamma-glutamyltransferase family protein, at 493,236 to 494,804
_17015
CSW01_17020: CSW01_17020 - hypothetical protein, at 494,879 to 495,862
_17020
CSW01_17025: CSW01_17025 - GGDEF domain-containing protein, at 495,859 to 497,097
_17025
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2 at 493.935 kb on - strand, within CSW01_17015 at 493.940 kb on - strand, within CSW01_17015 at 494.243 kb on - strand, within CSW01_17015 at 494.256 kb on - strand, within CSW01_17015 at 494.283 kb on - strand, within CSW01_17015 at 494.311 kb on + strand, within CSW01_17015 at 494.311 kb on + strand, within CSW01_17015 at 494.322 kb on + strand, within CSW01_17015 at 494.324 kb on - strand, within CSW01_17015 at 494.324 kb on - strand, within CSW01_17015 at 494.441 kb on + strand, within CSW01_17015 at 494.525 kb on + strand, within CSW01_17015 at 494.647 kb on - strand, within CSW01_17015 at 494.736 kb on + strand at 494.891 kb on + strand at 494.913 kb on - strand at 495.149 kb on - strand, within CSW01_17020 at 495.294 kb on - strand, within CSW01_17020 at 495.347 kb on + strand, within CSW01_17020 at 495.355 kb on - strand, within CSW01_17020 at 495.433 kb on + strand, within CSW01_17020 at 495.441 kb on - strand, within CSW01_17020 at 495.467 kb on - strand, within CSW01_17020 at 495.547 kb on - strand, within CSW01_17020 at 495.581 kb on + strand, within CSW01_17020 at 495.587 kb on + strand, within CSW01_17020 at 495.617 kb on + strand, within CSW01_17020 at 495.625 kb on - strand, within CSW01_17020 at 495.632 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.802 kb on - strand at 495.864 kb on - strand at 495.923 kb on + strand at 495.949 kb on + strand at 495.954 kb on + strand at 495.959 kb on + strand at 495.959 kb on + strand at 495.962 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 496.056 kb on + strand, within CSW01_17025 at 496.094 kb on - strand, within CSW01_17025 at 496.418 kb on + strand, within CSW01_17025 at 496.451 kb on - strand, within CSW01_17025 at 496.484 kb on - strand, within CSW01_17025 at 496.492 kb on + strand, within CSW01_17025 at 496.608 kb on - strand, within CSW01_17025 at 496.655 kb on - strand, within CSW01_17025 at 496.680 kb on - strand, within CSW01_17025 at 496.829 kb on + strand, within CSW01_17025
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 493,935 - CSW01_17015 0.45 -0.9 493,940 - CSW01_17015 0.45 +2.4 494,243 - CSW01_17015 0.64 +0.6 494,256 - CSW01_17015 0.65 -1.0 494,283 - CSW01_17015 0.67 +1.2 494,311 + CSW01_17015 0.69 +1.0 494,311 + CSW01_17015 0.69 +0.3 494,322 + CSW01_17015 0.69 +0.5 494,324 - CSW01_17015 0.69 -0.0 494,324 - CSW01_17015 0.69 +0.4 494,441 + CSW01_17015 0.77 +0.3 494,525 + CSW01_17015 0.82 -0.2 494,647 - CSW01_17015 0.90 -0.3 494,736 + -0.4 494,891 + +1.0 494,913 - +0.9 495,149 - CSW01_17020 0.27 +0.1 495,294 - CSW01_17020 0.42 +1.4 495,347 + CSW01_17020 0.48 -0.2 495,355 - CSW01_17020 0.48 +0.6 495,433 + CSW01_17020 0.56 +0.4 495,441 - CSW01_17020 0.57 +0.7 495,467 - CSW01_17020 0.60 +0.4 495,547 - CSW01_17020 0.68 +0.4 495,581 + CSW01_17020 0.71 +0.6 495,587 + CSW01_17020 0.72 +1.1 495,617 + CSW01_17020 0.75 +0.4 495,625 - CSW01_17020 0.76 +0.5 495,632 - CSW01_17020 0.77 +0.7 495,693 - CSW01_17020 0.83 -0.5 495,693 - CSW01_17020 0.83 +1.0 495,802 - +0.5 495,864 - +0.5 495,923 + +0.4 495,949 + +1.5 495,954 + +0.7 495,959 + +0.8 495,959 + +1.4 495,962 - +0.9 495,977 - -0.0 495,977 - +0.4 495,977 - +0.4 495,977 - -0.7 496,056 + CSW01_17025 0.16 +0.1 496,094 - CSW01_17025 0.19 +1.2 496,418 + CSW01_17025 0.45 +0.6 496,451 - CSW01_17025 0.48 +0.4 496,484 - CSW01_17025 0.50 +0.6 496,492 + CSW01_17025 0.51 -0.6 496,608 - CSW01_17025 0.60 +1.0 496,655 - CSW01_17025 0.64 +1.3 496,680 - CSW01_17025 0.66 -0.2 496,829 + CSW01_17025 0.78 +0.6
Or see this region's nucleotide sequence