Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16525 and CSW01_16530 overlap by 25 nucleotides CSW01_16530 and CSW01_16535 overlap by 84 nucleotides CSW01_16535 and CSW01_16540 overlap by 23 nucleotides CSW01_16540 and CSW01_16545 overlap by 52 nucleotides CSW01_16545 and CSW01_16550 are separated by 29 nucleotides CSW01_16550 and CSW01_16555 overlap by 84 nucleotides CSW01_16555 and CSW01_16560 are separated by 98 nucleotides CSW01_16560 and CSW01_16565 overlap by 14 nucleotides CSW01_16565 and CSW01_16570 are separated by 136 nucleotides CSW01_16570 and CSW01_16575 are separated by 11 nucleotides
CSW01_16525: CSW01_16525 - DUF1289 domain-containing protein, at 412,053 to 412,334
_16525
CSW01_16530: CSW01_16530 - DUF1196 domain-containing protein, at 412,310 to 412,468
_16530
CSW01_16535: CSW01_16535 - transcriptional regulator, at 412,385 to 412,522
_16535
CSW01_16540: CSW01_16540 - acetyltransferase, at 412,500 to 412,613
_16540
CSW01_16545: CSW01_16545 - DUF1289 domain-containing protein, at 412,562 to 412,789
_16545
CSW01_16550: CSW01_16550 - DUF1196 domain-containing protein, at 412,819 to 412,977
_16550
CSW01_16555: CSW01_16555 - transcriptional regulator, at 412,894 to 413,031
_16555
CSW01_16560: CSW01_16560 - toxin HigB-2, at 413,130 to 413,462
_16560
CSW01_16565: CSW01_16565 - transcriptional regulator, at 413,449 to 413,763
_16565
CSW01_16570: CSW01_16570 - N-acetyltransferase, at 413,900 to 414,334
_16570
CSW01_16575: CSW01_16575 - acetyltransferase, at 414,346 to 414,501
_16575
Position (kb) 413
414 Strain fitness (log2 ratio) -1
0
1
2 at 413.047 kb on - strand at 413.083 kb on - strand at 413.196 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.198 kb on + strand, within CSW01_16560 at 413.206 kb on - strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.207 kb on + strand, within CSW01_16560 at 413.230 kb on + strand, within CSW01_16560 at 413.238 kb on - strand, within CSW01_16560 at 413.353 kb on - strand, within CSW01_16560 at 414.040 kb on - strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.100 kb on - strand, within CSW01_16570 at 414.129 kb on + strand, within CSW01_16570 at 414.319 kb on - strand at 414.321 kb on + strand at 414.329 kb on + strand at 414.362 kb on - strand, within CSW01_16575 at 414.364 kb on - strand, within CSW01_16575
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 413,047 - -0.2 413,083 - -0.4 413,196 + CSW01_16560 0.20 +0.2 413,198 + CSW01_16560 0.20 -1.4 413,198 + CSW01_16560 0.20 -0.2 413,198 + CSW01_16560 0.20 +0.4 413,198 + CSW01_16560 0.20 -0.5 413,206 - CSW01_16560 0.23 +0.4 413,207 + CSW01_16560 0.23 +0.5 413,207 + CSW01_16560 0.23 +0.3 413,207 + CSW01_16560 0.23 +1.4 413,230 + CSW01_16560 0.30 +0.9 413,238 - CSW01_16560 0.32 +0.4 413,353 - CSW01_16560 0.67 +0.3 414,040 - CSW01_16570 0.32 -0.1 414,077 + CSW01_16570 0.41 +1.0 414,077 + CSW01_16570 0.41 +2.0 414,077 + CSW01_16570 0.41 +1.3 414,100 - CSW01_16570 0.46 -0.1 414,129 + CSW01_16570 0.53 -0.5 414,319 - -0.9 414,321 + -0.4 414,329 + +1.8 414,362 - CSW01_16575 0.10 +0.3 414,364 - CSW01_16575 0.12 +0.0
Or see this region's nucleotide sequence