Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16410 and CSW01_16415 are separated by 271 nucleotides CSW01_16415 and CSW01_16420 are separated by 177 nucleotides CSW01_16420 and CSW01_16425 are separated by 150 nucleotides
CSW01_16410: CSW01_16410 - site-specific DNA-methyltransferase, at 398,537 to 399,229
_16410
CSW01_16415: CSW01_16415 - hypothetical protein, at 399,501 to 399,926
_16415
CSW01_16420: CSW01_16420 - DUF3465 domain-containing protein, at 400,104 to 400,529
_16420
CSW01_16425: CSW01_16425 - hypothetical protein, at 400,680 to 401,210
_16425
Position (kb) 399
400 Strain fitness (log2 ratio) -1
0
1
2 at 398.507 kb on - strand at 398.611 kb on + strand, within CSW01_16410 at 398.634 kb on + strand, within CSW01_16410 at 398.642 kb on - strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on - strand, within CSW01_16410 at 398.649 kb on + strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.668 kb on - strand, within CSW01_16410 at 398.706 kb on + strand, within CSW01_16410 at 398.763 kb on + strand, within CSW01_16410 at 398.771 kb on - strand, within CSW01_16410 at 398.771 kb on - strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.786 kb on + strand, within CSW01_16410 at 398.793 kb on - strand, within CSW01_16410 at 398.793 kb on - strand, within CSW01_16410 at 398.794 kb on - strand, within CSW01_16410 at 398.795 kb on - strand, within CSW01_16410 at 398.795 kb on - strand, within CSW01_16410 at 398.901 kb on - strand, within CSW01_16410 at 398.919 kb on - strand, within CSW01_16410 at 398.994 kb on + strand, within CSW01_16410 at 399.002 kb on - strand, within CSW01_16410 at 399.029 kb on + strand, within CSW01_16410 at 399.179 kb on + strand at 399.203 kb on - strand at 399.241 kb on - strand at 399.290 kb on + strand at 399.330 kb on + strand at 399.330 kb on + strand at 399.338 kb on - strand at 399.355 kb on - strand at 399.355 kb on - strand at 400.137 kb on - strand at 400.161 kb on + strand, within CSW01_16420 at 400.179 kb on - strand, within CSW01_16420 at 400.247 kb on + strand, within CSW01_16420 at 400.283 kb on - strand, within CSW01_16420 at 400.653 kb on + strand at 400.660 kb on + strand at 400.725 kb on + strand at 400.726 kb on - strand at 400.797 kb on + strand, within CSW01_16425 at 400.854 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.863 kb on + strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425 at 400.871 kb on - strand, within CSW01_16425
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 398,507 - -0.6 398,611 + CSW01_16410 0.11 -0.0 398,634 + CSW01_16410 0.14 +2.7 398,642 - CSW01_16410 0.15 +0.7 398,644 + CSW01_16410 0.15 -0.2 398,644 + CSW01_16410 0.15 -1.0 398,644 - CSW01_16410 0.15 -0.4 398,649 + CSW01_16410 0.16 +0.6 398,652 - CSW01_16410 0.17 +0.3 398,652 - CSW01_16410 0.17 +0.4 398,657 - CSW01_16410 0.17 +0.1 398,657 - CSW01_16410 0.17 -0.7 398,668 - CSW01_16410 0.19 -0.6 398,706 + CSW01_16410 0.24 +1.7 398,763 + CSW01_16410 0.33 +0.8 398,771 - CSW01_16410 0.34 +0.7 398,771 - CSW01_16410 0.34 -0.8 398,785 + CSW01_16410 0.36 +0.1 398,785 + CSW01_16410 0.36 -0.4 398,785 + CSW01_16410 0.36 -0.4 398,785 + CSW01_16410 0.36 +0.3 398,786 + CSW01_16410 0.36 -0.6 398,793 - CSW01_16410 0.37 +0.3 398,793 - CSW01_16410 0.37 +0.1 398,794 - CSW01_16410 0.37 -0.5 398,795 - CSW01_16410 0.37 -0.0 398,795 - CSW01_16410 0.37 +0.4 398,901 - CSW01_16410 0.53 -1.0 398,919 - CSW01_16410 0.55 +0.1 398,994 + CSW01_16410 0.66 +0.0 399,002 - CSW01_16410 0.67 -0.3 399,029 + CSW01_16410 0.71 +0.6 399,179 + -0.6 399,203 - -0.2 399,241 - +0.6 399,290 + +0.5 399,330 + -0.6 399,330 + -0.4 399,338 - +0.3 399,355 - -0.0 399,355 - +0.8 400,137 - +0.5 400,161 + CSW01_16420 0.13 -0.1 400,179 - CSW01_16420 0.18 -1.3 400,247 + CSW01_16420 0.34 -0.1 400,283 - CSW01_16420 0.42 +0.3 400,653 + -0.8 400,660 + -0.2 400,725 + -0.2 400,726 - -0.3 400,797 + CSW01_16425 0.22 -0.4 400,854 + CSW01_16425 0.33 +0.5 400,863 + CSW01_16425 0.34 +0.2 400,863 + CSW01_16425 0.34 +0.4 400,871 - CSW01_16425 0.36 -0.2 400,871 - CSW01_16425 0.36 +0.1 400,871 - CSW01_16425 0.36 +0.2
Or see this region's nucleotide sequence