Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16010

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16000 and CSW01_16005 are separated by 0 nucleotidesCSW01_16005 and CSW01_16010 are separated by 241 nucleotidesCSW01_16010 and CSW01_16015 are separated by 56 nucleotides CSW01_16000: CSW01_16000 - type II toxin-antitoxin system RelE/ParE family toxin, at 363,532 to 363,867 _16000 CSW01_16005: CSW01_16005 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 363,868 to 364,110 _16005 CSW01_16010: CSW01_16010 - N-acetyltransferase, at 364,352 to 364,861 _16010 CSW01_16015: CSW01_16015 - hypothetical protein, at 364,918 to 365,571 _16015 Position (kb) 364 365Strain fitness (log2 ratio) -2 -1 0 1at 363.413 kb on - strandat 364.431 kb on - strand, within CSW01_16010at 364.553 kb on - strand, within CSW01_16010at 364.553 kb on - strand, within CSW01_16010at 364.553 kb on - strand, within CSW01_16010at 364.569 kb on + strand, within CSW01_16010at 364.593 kb on + strand, within CSW01_16010at 364.593 kb on + strand, within CSW01_16010at 364.593 kb on + strand, within CSW01_16010at 364.593 kb on + strand, within CSW01_16010at 364.593 kb on + strand, within CSW01_16010at 364.600 kb on + strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.601 kb on - strand, within CSW01_16010at 364.644 kb on - strand, within CSW01_16010at 364.651 kb on + strand, within CSW01_16010at 364.651 kb on + strand, within CSW01_16010at 364.651 kb on + strand, within CSW01_16010at 364.651 kb on + strand, within CSW01_16010at 364.651 kb on + strand, within CSW01_16010at 364.659 kb on - strand, within CSW01_16010at 364.659 kb on - strand, within CSW01_16010at 364.659 kb on - strand, within CSW01_16010at 364.659 kb on - strand, within CSW01_16010at 364.659 kb on - strand, within CSW01_16010at 364.666 kb on + strand, within CSW01_16010at 364.876 kb on - strandat 364.876 kb on - strandat 365.031 kb on + strand, within CSW01_16015at 365.097 kb on - strand, within CSW01_16015at 365.106 kb on - strand, within CSW01_16015at 365.139 kb on - strand, within CSW01_16015at 365.187 kb on + strand, within CSW01_16015at 365.195 kb on - strand, within CSW01_16015at 365.321 kb on - strand, within CSW01_16015at 365.338 kb on + strand, within CSW01_16015at 365.338 kb on + strand, within CSW01_16015at 365.338 kb on + strand, within CSW01_16015at 365.338 kb on + strand, within CSW01_16015at 365.369 kb on + strand, within CSW01_16015at 365.387 kb on - strand, within CSW01_16015at 365.420 kb on + strand, within CSW01_16015at 365.427 kb on + strand, within CSW01_16015at 365.435 kb on - strand, within CSW01_16015at 365.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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363,413 - -1.8
364,431 - CSW01_16010 0.15 -0.2
364,553 - CSW01_16010 0.39 +1.5
364,553 - CSW01_16010 0.39 -0.3
364,553 - CSW01_16010 0.39 -0.7
364,569 + CSW01_16010 0.43 -1.5
364,593 + CSW01_16010 0.47 +0.3
364,593 + CSW01_16010 0.47 +0.6
364,593 + CSW01_16010 0.47 +0.0
364,593 + CSW01_16010 0.47 -1.0
364,593 + CSW01_16010 0.47 -0.0
364,600 + CSW01_16010 0.49 -0.2
364,601 - CSW01_16010 0.49 +0.1
364,601 - CSW01_16010 0.49 +0.4
364,601 - CSW01_16010 0.49 -0.2
364,601 - CSW01_16010 0.49 +0.0
364,601 - CSW01_16010 0.49 -1.4
364,601 - CSW01_16010 0.49 +0.2
364,601 - CSW01_16010 0.49 -0.1
364,601 - CSW01_16010 0.49 -0.2
364,601 - CSW01_16010 0.49 -2.5
364,644 - CSW01_16010 0.57 +0.3
364,651 + CSW01_16010 0.59 +0.0
364,651 + CSW01_16010 0.59 +0.2
364,651 + CSW01_16010 0.59 +0.5
364,651 + CSW01_16010 0.59 +0.6
364,651 + CSW01_16010 0.59 -0.0
364,659 - CSW01_16010 0.60 +0.4
364,659 - CSW01_16010 0.60 +1.5
364,659 - CSW01_16010 0.60 +0.2
364,659 - CSW01_16010 0.60 -0.0
364,659 - CSW01_16010 0.60 +0.9
364,666 + CSW01_16010 0.62 +0.1
364,876 - -0.1
364,876 - -1.1
365,031 + CSW01_16015 0.17 +0.4
365,097 - CSW01_16015 0.27 +0.9
365,106 - CSW01_16015 0.29 +0.6
365,139 - CSW01_16015 0.34 +0.9
365,187 + CSW01_16015 0.41 -0.7
365,195 - CSW01_16015 0.42 +0.1
365,321 - CSW01_16015 0.62 +0.6
365,338 + CSW01_16015 0.64 +1.1
365,338 + CSW01_16015 0.64 -0.2
365,338 + CSW01_16015 0.64 +0.1
365,338 + CSW01_16015 0.64 +0.1
365,369 + CSW01_16015 0.69 -0.5
365,387 - CSW01_16015 0.72 +0.2
365,420 + CSW01_16015 0.77 -0.6
365,427 + CSW01_16015 0.78 -0.3
365,435 - CSW01_16015 0.79 +0.1
365,515 + +0.0

Or see this region's nucleotide sequence