Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15805

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15790 and CSW01_15795 are separated by 150 nucleotidesCSW01_15795 and CSW01_15800 overlap by 4 nucleotidesCSW01_15800 and CSW01_15805 are separated by 194 nucleotidesCSW01_15805 and CSW01_15810 are separated by 64 nucleotidesCSW01_15810 and CSW01_15815 are separated by 192 nucleotides CSW01_15790: CSW01_15790 - VOC family protein, at 340,859 to 341,272 _15790 CSW01_15795: CSW01_15795 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 341,423 to 341,701 _15795 CSW01_15800: CSW01_15800 - damage-inducible protein J, at 341,698 to 341,982 _15800 CSW01_15805: CSW01_15805 - lipocalin, at 342,177 to 342,692 _15805 CSW01_15810: CSW01_15810 - hypothetical protein, at 342,757 to 343,353 _15810 CSW01_15815: CSW01_15815 - general secretion pathway protein GspI, at 343,546 to 343,650 _15815 Position (kb) 342 343Strain fitness (log2 ratio) -1 0 1 2at 342.813 kb on + strandat 342.876 kb on - strand, within CSW01_15810at 343.242 kb on + strand, within CSW01_15810at 343.275 kb on + strand, within CSW01_15810at 343.275 kb on + strand, within CSW01_15810at 343.301 kb on - strandat 343.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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342,813 + +0.8
342,876 - CSW01_15810 0.20 -0.7
343,242 + CSW01_15810 0.81 +1.5
343,275 + CSW01_15810 0.87 -0.6
343,275 + CSW01_15810 0.87 +0.5
343,301 - +0.4
343,406 + +1.9

Or see this region's nucleotide sequence