Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15350

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15345 and CSW01_15350 are separated by 243 nucleotidesCSW01_15350 and CSW01_15355 are separated by 466 nucleotides CSW01_15345: CSW01_15345 - XRE family transcriptional regulator, at 297,559 to 298,182 _15345 CSW01_15350: CSW01_15350 - glycine cleavage system aminomethyltransferase T, at 298,426 to 299,556 _15350 CSW01_15355: CSW01_15355 - integrase, at 300,023 to 301,180 _15355 Position (kb) 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 297.445 kb on - strandat 297.631 kb on - strand, within CSW01_15345at 297.683 kb on + strand, within CSW01_15345at 297.702 kb on + strand, within CSW01_15345at 297.709 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.722 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.900 kb on - strand, within CSW01_15345at 297.920 kb on + strand, within CSW01_15345at 297.928 kb on - strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.985 kb on + strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 298.020 kb on - strand, within CSW01_15345at 298.087 kb on + strand, within CSW01_15345at 298.124 kb on - strandat 298.160 kb on + strandat 298.168 kb on - strandat 298.172 kb on + strandat 298.180 kb on - strandat 298.222 kb on + strandat 298.401 kb on + strandat 298.409 kb on - strandat 298.409 kb on - strandat 298.518 kb on - strandat 298.535 kb on + strandat 298.565 kb on + strand, within CSW01_15350at 298.622 kb on + strand, within CSW01_15350at 298.744 kb on - strand, within CSW01_15350at 298.776 kb on + strand, within CSW01_15350at 298.788 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.803 kb on - strand, within CSW01_15350at 298.859 kb on + strand, within CSW01_15350at 298.867 kb on - strand, within CSW01_15350at 298.902 kb on - strand, within CSW01_15350at 298.910 kb on - strand, within CSW01_15350at 298.946 kb on + strand, within CSW01_15350at 298.946 kb on - strand, within CSW01_15350at 298.948 kb on + strand, within CSW01_15350at 298.996 kb on + strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.005 kb on + strand, within CSW01_15350at 299.090 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350at 299.203 kb on - strand, within CSW01_15350at 299.203 kb on - strand, within CSW01_15350at 299.222 kb on - strand, within CSW01_15350at 299.286 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.350 kb on - strand, within CSW01_15350at 299.364 kb on + strand, within CSW01_15350at 299.436 kb on + strand, within CSW01_15350at 299.436 kb on + strand, within CSW01_15350at 299.449 kb on - strandat 299.455 kb on + strandat 299.463 kb on - strandat 299.463 kb on - strandat 299.507 kb on - strandat 299.557 kb on - strandat 299.710 kb on - strandat 299.710 kb on - strandat 299.847 kb on - strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.869 kb on - strandat 299.869 kb on - strandat 299.869 kb on - strandat 299.869 kb on - strandat 300.075 kb on + strandat 300.078 kb on - strandat 300.102 kb on + strandat 300.102 kb on + strandat 300.110 kb on - strandat 300.150 kb on - strand, within CSW01_15355at 300.222 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.378 kb on + strand, within CSW01_15355at 300.396 kb on - strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.422 kb on - strand, within CSW01_15355at 300.426 kb on + strand, within CSW01_15355at 300.505 kb on + strand, within CSW01_15355at 300.506 kb on - strand, within CSW01_15355at 300.546 kb on + strand, within CSW01_15355at 300.552 kb on - strand, within CSW01_15355at 300.554 kb on - strand, within CSW01_15355

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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297,445 - +0.7
297,631 - CSW01_15345 0.12 +0.2
297,683 + CSW01_15345 0.20 +0.8
297,702 + CSW01_15345 0.23 -0.7
297,709 + CSW01_15345 0.24 +0.2
297,719 + CSW01_15345 0.26 +0.4
297,719 + CSW01_15345 0.26 +0.0
297,719 + CSW01_15345 0.26 +0.2
297,719 + CSW01_15345 0.26 +0.9
297,719 + CSW01_15345 0.26 +0.6
297,722 - CSW01_15345 0.26 -0.2
297,727 - CSW01_15345 0.27 +0.2
297,727 - CSW01_15345 0.27 +0.3
297,727 - CSW01_15345 0.27 +2.5
297,727 - CSW01_15345 0.27 -0.7
297,727 - CSW01_15345 0.27 -0.8
297,762 + CSW01_15345 0.33 -0.8
297,762 + CSW01_15345 0.33 +1.0
297,770 - CSW01_15345 0.34 -1.0
297,770 - CSW01_15345 0.34 -0.1
297,900 - CSW01_15345 0.55 +0.3
297,920 + CSW01_15345 0.58 +0.2
297,928 - CSW01_15345 0.59 +0.1
297,969 + CSW01_15345 0.66 +0.5
297,969 + CSW01_15345 0.66 +0.1
297,985 + CSW01_15345 0.68 +0.8
297,985 - CSW01_15345 0.68 +0.2
297,985 - CSW01_15345 0.68 -0.5
298,020 - CSW01_15345 0.74 +0.6
298,087 + CSW01_15345 0.85 -1.0
298,124 - +1.8
298,160 + +1.9
298,168 - +0.8
298,172 + -0.0
298,180 - -0.1
298,222 + +1.2
298,401 + +0.1
298,409 - +0.7
298,409 - -0.2
298,518 - +0.7
298,535 + -1.4
298,565 + CSW01_15350 0.12 +0.3
298,622 + CSW01_15350 0.17 +0.2
298,744 - CSW01_15350 0.28 -2.2
298,776 + CSW01_15350 0.31 +0.4
298,788 + CSW01_15350 0.32 +0.2
298,795 + CSW01_15350 0.33 +1.0
298,795 + CSW01_15350 0.33 +0.9
298,795 + CSW01_15350 0.33 -0.2
298,803 - CSW01_15350 0.33 +0.3
298,859 + CSW01_15350 0.38 -0.6
298,867 - CSW01_15350 0.39 +0.6
298,902 - CSW01_15350 0.42 +1.5
298,910 - CSW01_15350 0.43 -0.2
298,946 + CSW01_15350 0.46 +0.7
298,946 - CSW01_15350 0.46 -0.5
298,948 + CSW01_15350 0.46 +3.2
298,996 + CSW01_15350 0.50 -1.0
299,004 - CSW01_15350 0.51 -4.0
299,004 - CSW01_15350 0.51 -1.1
299,004 - CSW01_15350 0.51 -0.6
299,005 + CSW01_15350 0.51 +0.7
299,090 + CSW01_15350 0.59 -0.9
299,096 + CSW01_15350 0.59 -0.2
299,096 + CSW01_15350 0.59 +0.5
299,096 + CSW01_15350 0.59 -0.8
299,096 + CSW01_15350 0.59 +0.5
299,096 + CSW01_15350 0.59 -0.4
299,096 + CSW01_15350 0.59 +0.6
299,104 - CSW01_15350 0.60 -0.8
299,104 - CSW01_15350 0.60 -0.8
299,203 - CSW01_15350 0.69 -1.1
299,203 - CSW01_15350 0.69 +0.6
299,222 - CSW01_15350 0.70 +0.4
299,286 + CSW01_15350 0.76 +0.2
299,342 + CSW01_15350 0.81 -0.5
299,342 + CSW01_15350 0.81 +1.9
299,342 + CSW01_15350 0.81 -0.4
299,342 + CSW01_15350 0.81 -0.3
299,350 - CSW01_15350 0.82 -0.0
299,364 + CSW01_15350 0.83 -0.5
299,436 + CSW01_15350 0.89 +0.0
299,436 + CSW01_15350 0.89 -1.4
299,449 - +0.1
299,455 + -0.3
299,463 - +0.6
299,463 - +0.2
299,507 - -0.5
299,557 - -0.1
299,710 - +0.1
299,710 - +0.7
299,847 - +0.1
299,861 + +0.6
299,861 + +0.2
299,861 + -0.3
299,861 + +0.6
299,861 + +1.3
299,861 + +1.0
299,869 - +0.1
299,869 - -0.2
299,869 - +0.9
299,869 - -0.3
300,075 + +0.6
300,078 - +0.2
300,102 + -0.2
300,102 + +0.4
300,110 - +0.3
300,150 - CSW01_15355 0.11 +0.7
300,222 + CSW01_15355 0.17 +1.6
300,366 + CSW01_15355 0.30 +0.3
300,366 + CSW01_15355 0.30 -0.2
300,366 + CSW01_15355 0.30 +0.1
300,366 + CSW01_15355 0.30 +1.3
300,366 + CSW01_15355 0.30 +0.7
300,366 + CSW01_15355 0.30 +0.6
300,366 + CSW01_15355 0.30 +1.6
300,366 + CSW01_15355 0.30 +0.5
300,366 + CSW01_15355 0.30 -1.1
300,366 + CSW01_15355 0.30 +0.7
300,366 + CSW01_15355 0.30 -0.3
300,366 + CSW01_15355 0.30 +0.4
300,366 + CSW01_15355 0.30 +0.5
300,374 - CSW01_15355 0.30 +0.1
300,374 - CSW01_15355 0.30 +0.1
300,374 - CSW01_15355 0.30 -0.3
300,374 - CSW01_15355 0.30 +0.3
300,374 - CSW01_15355 0.30 +1.3
300,374 - CSW01_15355 0.30 -0.8
300,374 - CSW01_15355 0.30 -0.0
300,374 - CSW01_15355 0.30 +0.7
300,378 + CSW01_15355 0.31 -0.4
300,396 - CSW01_15355 0.32 +0.0
300,414 + CSW01_15355 0.34 +0.7
300,414 + CSW01_15355 0.34 -0.3
300,414 + CSW01_15355 0.34 -0.3
300,422 - CSW01_15355 0.34 -1.4
300,426 + CSW01_15355 0.35 -0.8
300,505 + CSW01_15355 0.42 +0.7
300,506 - CSW01_15355 0.42 +0.2
300,546 + CSW01_15355 0.45 -0.8
300,552 - CSW01_15355 0.46 -1.8
300,554 - CSW01_15355 0.46 -0.5

Or see this region's nucleotide sequence