Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14825

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14815 and CSW01_14820 are separated by 69 nucleotidesCSW01_14820 and CSW01_14825 are separated by 408 nucleotidesCSW01_14825 and CSW01_14830 are separated by 245 nucleotidesCSW01_14830 and CSW01_14835 are separated by 289 nucleotides CSW01_14815: CSW01_14815 - hypothetical protein, at 180,703 to 180,915 _14815 CSW01_14820: CSW01_14820 - hypothetical protein, at 180,985 to 181,467 _14820 CSW01_14825: CSW01_14825 - GGDEF domain-containing protein, at 181,876 to 184,008 _14825 CSW01_14830: CSW01_14830 - cold-shock protein CspA, at 184,254 to 184,466 _14830 CSW01_14835: CSW01_14835 - SIMPL domain-containing protein, at 184,756 to 185,472 _14835 Position (kb) 181 182 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 180.888 kb on - strand, within CSW01_14815at 180.901 kb on + strandat 180.923 kb on + strandat 180.949 kb on + strandat 180.949 kb on + strandat 180.949 kb on + strandat 180.957 kb on - strandat 180.957 kb on - strandat 180.957 kb on - strandat 181.008 kb on - strandat 181.102 kb on - strand, within CSW01_14820at 181.160 kb on - strand, within CSW01_14820at 181.160 kb on - strand, within CSW01_14820at 181.173 kb on - strand, within CSW01_14820at 181.225 kb on - strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.263 kb on + strand, within CSW01_14820at 181.268 kb on + strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.271 kb on - strand, within CSW01_14820at 181.293 kb on + strand, within CSW01_14820at 181.301 kb on - strand, within CSW01_14820at 181.352 kb on + strand, within CSW01_14820at 181.363 kb on + strand, within CSW01_14820at 181.420 kb on - strandat 181.554 kb on + strandat 181.571 kb on + strandat 181.572 kb on - strandat 181.579 kb on - strandat 181.579 kb on - strandat 181.579 kb on - strandat 181.581 kb on - strandat 181.581 kb on - strandat 181.858 kb on + strandat 181.866 kb on - strandat 181.901 kb on - strandat 181.946 kb on - strandat 182.002 kb on + strandat 182.017 kb on + strandat 182.058 kb on + strandat 182.066 kb on - strandat 182.087 kb on - strandat 182.087 kb on - strandat 182.094 kb on + strand, within CSW01_14825at 182.100 kb on - strand, within CSW01_14825at 182.118 kb on - strand, within CSW01_14825at 182.213 kb on - strand, within CSW01_14825at 182.246 kb on + strand, within CSW01_14825at 182.254 kb on - strand, within CSW01_14825at 182.365 kb on - strand, within CSW01_14825at 182.388 kb on - strand, within CSW01_14825at 182.414 kb on + strand, within CSW01_14825at 182.445 kb on - strand, within CSW01_14825at 182.456 kb on - strand, within CSW01_14825at 182.456 kb on - strand, within CSW01_14825at 182.478 kb on - strand, within CSW01_14825at 182.495 kb on - strand, within CSW01_14825at 182.576 kb on + strand, within CSW01_14825at 182.627 kb on - strand, within CSW01_14825at 182.641 kb on - strand, within CSW01_14825at 182.664 kb on - strand, within CSW01_14825at 182.703 kb on + strand, within CSW01_14825at 182.709 kb on - strand, within CSW01_14825at 182.711 kb on + strand, within CSW01_14825at 182.711 kb on + strand, within CSW01_14825at 182.850 kb on + strand, within CSW01_14825at 182.911 kb on - strand, within CSW01_14825at 182.913 kb on - strand, within CSW01_14825at 182.919 kb on - strand, within CSW01_14825at 182.940 kb on + strand, within CSW01_14825at 182.942 kb on + strand, within CSW01_14825at 182.942 kb on + strand, within CSW01_14825at 182.950 kb on - strand, within CSW01_14825at 182.969 kb on - strand, within CSW01_14825at 182.978 kb on + strand, within CSW01_14825at 182.986 kb on - strand, within CSW01_14825at 182.986 kb on - strand, within CSW01_14825at 183.064 kb on - strand, within CSW01_14825at 183.186 kb on - strand, within CSW01_14825at 183.223 kb on + strand, within CSW01_14825at 183.231 kb on - strand, within CSW01_14825at 183.302 kb on + strand, within CSW01_14825at 183.302 kb on + strand, within CSW01_14825at 183.302 kb on + strand, within CSW01_14825at 183.310 kb on - strand, within CSW01_14825at 183.310 kb on - strand, within CSW01_14825at 183.312 kb on + strand, within CSW01_14825at 183.360 kb on - strand, within CSW01_14825at 183.360 kb on - strand, within CSW01_14825at 183.407 kb on + strand, within CSW01_14825at 183.407 kb on + strand, within CSW01_14825at 183.415 kb on - strand, within CSW01_14825at 183.415 kb on - strand, within CSW01_14825at 183.415 kb on - strand, within CSW01_14825at 183.436 kb on - strand, within CSW01_14825at 183.503 kb on + strand, within CSW01_14825at 183.533 kb on + strand, within CSW01_14825at 183.635 kb on + strand, within CSW01_14825at 183.803 kb on + strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.835 kb on + strandat 183.900 kb on + strandat 183.900 kb on + strandat 183.908 kb on - strandat 183.908 kb on - strandat 183.908 kb on - strandat 183.908 kb on - strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.930 kb on - strandat 183.957 kb on + strandat 184.446 kb on + strandat 184.642 kb on + strandat 184.655 kb on - strandat 184.727 kb on + strandat 184.781 kb on - strandat 184.958 kb on + strand, within CSW01_14835

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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180,888 - CSW01_14815 0.87 -0.0
180,901 + +0.5
180,923 + +1.4
180,949 + +0.5
180,949 + -0.0
180,949 + +0.5
180,957 - +0.1
180,957 - +0.7
180,957 - -0.0
181,008 - +0.6
181,102 - CSW01_14820 0.24 +0.6
181,160 - CSW01_14820 0.36 +0.0
181,160 - CSW01_14820 0.36 +0.1
181,173 - CSW01_14820 0.39 -0.1
181,225 - CSW01_14820 0.50 +1.0
181,263 + CSW01_14820 0.58 +0.0
181,263 + CSW01_14820 0.58 -0.2
181,263 + CSW01_14820 0.58 +0.7
181,268 + CSW01_14820 0.59 +0.2
181,271 - CSW01_14820 0.59 +0.8
181,271 - CSW01_14820 0.59 +0.7
181,271 - CSW01_14820 0.59 -0.7
181,293 + CSW01_14820 0.64 +0.6
181,301 - CSW01_14820 0.65 -2.1
181,352 + CSW01_14820 0.76 +0.2
181,363 + CSW01_14820 0.78 -0.7
181,420 - -1.2
181,554 + +0.1
181,571 + +0.0
181,572 - +0.2
181,579 - +0.1
181,579 - +1.1
181,579 - -0.5
181,581 - +0.7
181,581 - -0.4
181,858 + +1.0
181,866 - -0.2
181,901 - -0.2
181,946 - -0.1
182,002 + +0.6
182,017 + +0.1
182,058 + +0.6
182,066 - -0.2
182,087 - -0.3
182,087 - -0.2
182,094 + CSW01_14825 0.10 -0.2
182,100 - CSW01_14825 0.11 +1.0
182,118 - CSW01_14825 0.11 +1.3
182,213 - CSW01_14825 0.16 +1.3
182,246 + CSW01_14825 0.17 +0.6
182,254 - CSW01_14825 0.18 +0.5
182,365 - CSW01_14825 0.23 +0.2
182,388 - CSW01_14825 0.24 +0.0
182,414 + CSW01_14825 0.25 +0.9
182,445 - CSW01_14825 0.27 +0.8
182,456 - CSW01_14825 0.27 +1.7
182,456 - CSW01_14825 0.27 +0.6
182,478 - CSW01_14825 0.28 +0.5
182,495 - CSW01_14825 0.29 +0.4
182,576 + CSW01_14825 0.33 -0.5
182,627 - CSW01_14825 0.35 +0.6
182,641 - CSW01_14825 0.36 -0.6
182,664 - CSW01_14825 0.37 +0.0
182,703 + CSW01_14825 0.39 +0.4
182,709 - CSW01_14825 0.39 -0.2
182,711 + CSW01_14825 0.39 +0.2
182,711 + CSW01_14825 0.39 +2.0
182,850 + CSW01_14825 0.46 -0.5
182,911 - CSW01_14825 0.49 +0.3
182,913 - CSW01_14825 0.49 +0.7
182,919 - CSW01_14825 0.49 -0.6
182,940 + CSW01_14825 0.50 +1.0
182,942 + CSW01_14825 0.50 -0.2
182,942 + CSW01_14825 0.50 -0.5
182,950 - CSW01_14825 0.50 +0.5
182,969 - CSW01_14825 0.51 +0.6
182,978 + CSW01_14825 0.52 -0.3
182,986 - CSW01_14825 0.52 +0.5
182,986 - CSW01_14825 0.52 -1.7
183,064 - CSW01_14825 0.56 -0.5
183,186 - CSW01_14825 0.61 +0.5
183,223 + CSW01_14825 0.63 +0.0
183,231 - CSW01_14825 0.64 +0.2
183,302 + CSW01_14825 0.67 +0.9
183,302 + CSW01_14825 0.67 +0.3
183,302 + CSW01_14825 0.67 +0.1
183,310 - CSW01_14825 0.67 -1.1
183,310 - CSW01_14825 0.67 +0.9
183,312 + CSW01_14825 0.67 +0.7
183,360 - CSW01_14825 0.70 +0.9
183,360 - CSW01_14825 0.70 +0.9
183,407 + CSW01_14825 0.72 +1.2
183,407 + CSW01_14825 0.72 +0.5
183,415 - CSW01_14825 0.72 +0.4
183,415 - CSW01_14825 0.72 +0.5
183,415 - CSW01_14825 0.72 +0.3
183,436 - CSW01_14825 0.73 -0.4
183,503 + CSW01_14825 0.76 +0.3
183,533 + CSW01_14825 0.78 -0.1
183,635 + CSW01_14825 0.82 +0.4
183,803 + +0.2
183,811 - +0.2
183,811 - +0.9
183,811 - -0.0
183,811 - -0.6
183,835 + +0.5
183,900 + +0.6
183,900 + +0.9
183,908 - +1.2
183,908 - +0.6
183,908 - +0.1
183,908 - -1.8
183,922 + +0.4
183,922 + -0.1
183,922 + +0.3
183,922 + +0.1
183,922 + +0.7
183,922 + +1.4
183,922 + +0.8
183,922 + +1.8
183,922 + +0.2
183,922 + +1.1
183,922 + +0.5
183,930 - -1.1
183,930 - -0.8
183,930 - -0.3
183,930 - +0.7
183,930 - +0.1
183,930 - -0.8
183,930 - +0.3
183,957 + -1.1
184,446 + -0.2
184,642 + -0.9
184,655 - +0.2
184,727 + +0.4
184,781 - -0.2
184,958 + CSW01_14835 0.28 +0.4

Or see this region's nucleotide sequence