Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14490

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14485 and CSW01_14490 are separated by 42 nucleotidesCSW01_14490 and CSW01_14495 are separated by 12 nucleotidesCSW01_14495 and CSW01_14500 are separated by 117 nucleotides CSW01_14485: CSW01_14485 - hypothetical protein, at 102,419 to 103,117 _14485 CSW01_14490: CSW01_14490 - endo-1,4-beta-xylanase, at 103,160 to 104,383 _14490 CSW01_14495: CSW01_14495 - NUDIX hydrolase, at 104,396 to 105,112 _14495 CSW01_14500: CSW01_14500 - hypothetical protein, at 105,230 to 105,424 _14500 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.175 kb on - strandat 102.207 kb on + strandat 102.215 kb on - strandat 102.225 kb on - strandat 102.352 kb on - strandat 102.395 kb on + strandat 102.485 kb on + strandat 102.493 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.503 kb on - strand, within CSW01_14485at 102.519 kb on + strand, within CSW01_14485at 102.555 kb on - strand, within CSW01_14485at 102.558 kb on - strand, within CSW01_14485at 102.601 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.649 kb on + strand, within CSW01_14485at 102.662 kb on + strand, within CSW01_14485at 102.677 kb on - strand, within CSW01_14485at 102.729 kb on - strand, within CSW01_14485at 102.819 kb on + strand, within CSW01_14485at 102.853 kb on + strand, within CSW01_14485at 102.902 kb on + strand, within CSW01_14485at 102.905 kb on - strand, within CSW01_14485at 103.052 kb on - strandat 103.062 kb on - strandat 103.110 kb on + strandat 103.110 kb on - strandat 103.112 kb on + strandat 103.120 kb on - strandat 103.120 kb on - strandat 103.125 kb on - strandat 103.183 kb on + strandat 103.192 kb on - strandat 103.199 kb on - strandat 103.244 kb on + strandat 103.252 kb on - strandat 103.252 kb on - strandat 103.252 kb on - strandat 103.271 kb on + strandat 103.272 kb on + strandat 103.280 kb on - strandat 103.298 kb on + strand, within CSW01_14490at 103.306 kb on + strand, within CSW01_14490at 103.316 kb on - strand, within CSW01_14490at 103.356 kb on - strand, within CSW01_14490at 103.435 kb on - strand, within CSW01_14490at 103.485 kb on - strand, within CSW01_14490at 103.538 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.608 kb on - strand, within CSW01_14490at 103.671 kb on + strand, within CSW01_14490at 103.724 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.756 kb on - strand, within CSW01_14490at 103.824 kb on + strand, within CSW01_14490at 103.883 kb on + strand, within CSW01_14490at 103.891 kb on + strand, within CSW01_14490at 103.891 kb on - strand, within CSW01_14490at 103.913 kb on + strand, within CSW01_14490at 103.932 kb on - strand, within CSW01_14490at 103.955 kb on + strand, within CSW01_14490at 103.963 kb on - strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.973 kb on + strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.981 kb on - strand, within CSW01_14490at 103.990 kb on - strand, within CSW01_14490at 103.991 kb on - strand, within CSW01_14490at 104.115 kb on + strand, within CSW01_14490at 104.123 kb on - strand, within CSW01_14490at 104.189 kb on - strand, within CSW01_14490at 104.191 kb on + strand, within CSW01_14490at 104.350 kb on - strandat 104.360 kb on - strandat 104.360 kb on - strandat 104.360 kb on - strandat 104.378 kb on + strandat 104.476 kb on - strand, within CSW01_14495at 104.476 kb on - strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.624 kb on - strand, within CSW01_14495at 104.624 kb on - strand, within CSW01_14495at 104.639 kb on + strand, within CSW01_14495at 104.853 kb on + strand, within CSW01_14495at 104.861 kb on - strand, within CSW01_14495at 105.079 kb on + strandat 105.089 kb on + strandat 105.124 kb on + strandat 105.132 kb on - strandat 105.132 kb on - strandat 105.192 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.226 kb on + strandat 105.266 kb on + strand, within CSW01_14500at 105.267 kb on + strand, within CSW01_14500at 105.336 kb on + strand, within CSW01_14500at 105.336 kb on + strand, within CSW01_14500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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102,175 - +0.0
102,207 + -0.7
102,215 - +0.1
102,225 - +0.3
102,352 - +0.5
102,395 + +0.4
102,485 + +0.1
102,493 + CSW01_14485 0.11 -0.4
102,495 + CSW01_14485 0.11 +0.4
102,495 + CSW01_14485 0.11 -0.3
102,503 - CSW01_14485 0.12 +0.1
102,519 + CSW01_14485 0.14 +0.4
102,555 - CSW01_14485 0.19 -0.2
102,558 - CSW01_14485 0.20 -0.0
102,601 - CSW01_14485 0.26 +0.5
102,614 - CSW01_14485 0.28 -1.0
102,614 - CSW01_14485 0.28 -1.2
102,649 + CSW01_14485 0.33 +0.1
102,662 + CSW01_14485 0.35 -1.7
102,677 - CSW01_14485 0.37 +1.4
102,729 - CSW01_14485 0.44 +1.6
102,819 + CSW01_14485 0.57 -0.1
102,853 + CSW01_14485 0.62 +0.3
102,902 + CSW01_14485 0.69 +0.6
102,905 - CSW01_14485 0.70 +1.8
103,052 - -2.9
103,062 - +0.3
103,110 + -0.4
103,110 - +0.2
103,112 + +0.3
103,120 - +0.1
103,120 - -0.2
103,125 - +0.5
103,183 + -0.5
103,192 - -0.2
103,199 - +1.0
103,244 + +0.2
103,252 - -1.3
103,252 - +0.4
103,252 - -1.0
103,271 + +1.0
103,272 + -0.3
103,280 - -0.4
103,298 + CSW01_14490 0.11 +0.7
103,306 + CSW01_14490 0.12 -0.5
103,316 - CSW01_14490 0.13 -0.1
103,356 - CSW01_14490 0.16 +1.0
103,435 - CSW01_14490 0.22 +0.3
103,485 - CSW01_14490 0.27 +0.6
103,538 - CSW01_14490 0.31 +1.1
103,598 - CSW01_14490 0.36 -0.3
103,598 - CSW01_14490 0.36 +0.3
103,608 - CSW01_14490 0.37 -0.3
103,671 + CSW01_14490 0.42 -0.0
103,724 + CSW01_14490 0.46 -0.1
103,737 + CSW01_14490 0.47 +0.7
103,737 + CSW01_14490 0.47 +1.0
103,756 - CSW01_14490 0.49 -0.1
103,824 + CSW01_14490 0.54 -0.1
103,883 + CSW01_14490 0.59 +0.4
103,891 + CSW01_14490 0.60 -0.1
103,891 - CSW01_14490 0.60 -0.4
103,913 + CSW01_14490 0.62 -0.5
103,932 - CSW01_14490 0.63 +0.1
103,955 + CSW01_14490 0.65 +1.0
103,963 - CSW01_14490 0.66 -0.5
103,972 + CSW01_14490 0.66 +0.1
103,972 + CSW01_14490 0.66 -0.2
103,972 + CSW01_14490 0.66 +0.5
103,973 + CSW01_14490 0.66 +0.3
103,980 - CSW01_14490 0.67 -0.5
103,980 - CSW01_14490 0.67 +0.3
103,981 - CSW01_14490 0.67 +0.5
103,990 - CSW01_14490 0.68 -0.6
103,991 - CSW01_14490 0.68 +0.8
104,115 + CSW01_14490 0.78 +0.3
104,123 - CSW01_14490 0.79 +0.4
104,189 - CSW01_14490 0.84 +0.7
104,191 + CSW01_14490 0.84 -0.2
104,350 - +0.9
104,360 - -0.0
104,360 - +1.2
104,360 - -0.3
104,378 + -0.0
104,476 - CSW01_14495 0.11 -0.2
104,476 - CSW01_14495 0.11 -0.5
104,616 + CSW01_14495 0.31 -2.5
104,616 + CSW01_14495 0.31 -0.1
104,616 + CSW01_14495 0.31 -0.5
104,624 - CSW01_14495 0.32 -2.0
104,624 - CSW01_14495 0.32 -0.3
104,639 + CSW01_14495 0.34 +0.3
104,853 + CSW01_14495 0.64 +0.3
104,861 - CSW01_14495 0.65 +0.1
105,079 + -1.3
105,089 + -1.3
105,124 + -0.2
105,132 - -0.4
105,132 - +0.2
105,192 + +0.1
105,207 + +0.4
105,207 + -2.3
105,207 + +0.4
105,207 + +0.6
105,207 + +0.6
105,207 + +0.1
105,215 - +0.3
105,215 - +1.0
105,215 - +1.1
105,215 - +0.3
105,226 + +0.5
105,266 + CSW01_14500 0.18 +0.5
105,267 + CSW01_14500 0.19 +0.3
105,336 + CSW01_14500 0.54 -0.3
105,336 + CSW01_14500 0.54 +0.1

Or see this region's nucleotide sequence