Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14265

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14255 and CSW01_14260 are separated by 78 nucleotidesCSW01_14260 and CSW01_14265 are separated by 131 nucleotidesCSW01_14265 and CSW01_14270 are separated by 232 nucleotides CSW01_14255: CSW01_14255 - sodium/glutamate symporter, at 48,767 to 49,993 _14255 CSW01_14260: CSW01_14260 - cation tolerance protein CutA, at 50,072 to 50,830 _14260 CSW01_14265: CSW01_14265 - N-acetyltransferase, at 50,962 to 51,246 _14265 CSW01_14270: CSW01_14270 - protease, at 51,479 to 54,733 _14270 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1at 50.101 kb on + strandat 50.109 kb on - strandat 50.245 kb on - strand, within CSW01_14260at 50.249 kb on + strand, within CSW01_14260at 50.481 kb on - strand, within CSW01_14260at 50.524 kb on + strand, within CSW01_14260at 50.712 kb on + strand, within CSW01_14260at 50.724 kb on + strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.734 kb on + strand, within CSW01_14260at 50.864 kb on + strandat 50.964 kb on + strandat 50.964 kb on + strandat 51.207 kb on + strand, within CSW01_14265at 51.215 kb on - strand, within CSW01_14265at 51.260 kb on - strandat 51.383 kb on + strandat 51.502 kb on + strandat 51.512 kb on - strandat 51.512 kb on - strandat 51.516 kb on + strandat 51.524 kb on - strandat 51.740 kb on + strandat 51.815 kb on + strand, within CSW01_14270at 51.938 kb on + strand, within CSW01_14270at 51.943 kb on + strand, within CSW01_14270at 51.961 kb on + strand, within CSW01_14270at 51.961 kb on + strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.982 kb on + strand, within CSW01_14270at 52.070 kb on - strand, within CSW01_14270at 52.089 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.193 kb on + strand, within CSW01_14270at 52.193 kb on + strand, within CSW01_14270at 52.203 kb on + strand, within CSW01_14270at 52.217 kb on + strand, within CSW01_14270at 52.223 kb on - strand, within CSW01_14270

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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50,101 + +0.1
50,109 - +0.2
50,245 - CSW01_14260 0.23 +0.7
50,249 + CSW01_14260 0.23 -0.3
50,481 - CSW01_14260 0.54 +0.7
50,524 + CSW01_14260 0.60 -0.5
50,712 + CSW01_14260 0.84 -0.3
50,724 + CSW01_14260 0.86 -0.1
50,725 - CSW01_14260 0.86 +1.1
50,725 - CSW01_14260 0.86 +0.2
50,732 - CSW01_14260 0.87 -0.6
50,732 - CSW01_14260 0.87 -0.0
50,732 - CSW01_14260 0.87 -0.6
50,734 + CSW01_14260 0.87 +0.4
50,864 + -2.1
50,964 + +0.7
50,964 + +0.5
51,207 + CSW01_14265 0.86 +0.5
51,215 - CSW01_14265 0.89 +0.8
51,260 - +0.1
51,383 + -0.5
51,502 + -1.1
51,512 - +0.5
51,512 - +0.1
51,516 + +0.4
51,524 - +1.4
51,740 + +0.0
51,815 + CSW01_14270 0.10 -0.0
51,938 + CSW01_14270 0.14 +1.1
51,943 + CSW01_14270 0.14 +0.3
51,961 + CSW01_14270 0.15 -0.3
51,961 + CSW01_14270 0.15 -0.0
51,969 - CSW01_14270 0.15 -0.7
51,969 - CSW01_14270 0.15 -0.6
51,969 - CSW01_14270 0.15 +0.3
51,982 + CSW01_14270 0.15 +1.7
52,070 - CSW01_14270 0.18 -0.0
52,089 + CSW01_14270 0.19 +0.4
52,090 + CSW01_14270 0.19 +0.1
52,090 + CSW01_14270 0.19 +0.3
52,090 + CSW01_14270 0.19 -2.1
52,090 + CSW01_14270 0.19 +0.1
52,098 - CSW01_14270 0.19 +0.5
52,098 - CSW01_14270 0.19 -0.3
52,098 - CSW01_14270 0.19 +0.1
52,098 - CSW01_14270 0.19 +0.3
52,098 - CSW01_14270 0.19 +1.0
52,186 + CSW01_14270 0.22 +0.3
52,186 + CSW01_14270 0.22 +0.5
52,186 + CSW01_14270 0.22 +0.2
52,193 + CSW01_14270 0.22 -0.5
52,193 + CSW01_14270 0.22 -0.4
52,203 + CSW01_14270 0.22 -0.2
52,217 + CSW01_14270 0.23 +0.8
52,223 - CSW01_14270 0.23 -0.3

Or see this region's nucleotide sequence