Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13160

Experiment: LB_Anaerobic_18HR_ZN20A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_18HR_ZN20A
2,799,090	-		CSW01_13155	0.68	-0.8
2,799,130	-		CSW01_13155	0.69	+1.2
2,799,148	-		CSW01_13155	0.70	+0.1
2,799,215	-		CSW01_13155	0.73	-1.1
2,799,375	+		CSW01_13155	0.79	-0.3
2,799,375	+		CSW01_13155	0.79	-0.5
2,799,381	-		CSW01_13155	0.79	-0.3
2,799,394	-		CSW01_13155	0.80	+0.0
2,799,430	+		CSW01_13155	0.81	+0.7
2,799,430	+		CSW01_13155	0.81	-1.1
2,799,438	-		CSW01_13155	0.82	+0.4
2,799,480	+		CSW01_13155	0.83	-0.7
2,799,515	-		CSW01_13155	0.85	-0.7
2,799,566	+		CSW01_13155	0.87	+0.0
2,799,568	-		CSW01_13155	0.87	-0.5
2,799,654	-				+1.1
2,799,710	+				+0.1
2,799,718	-				+0.8
2,799,724	-				+0.6
2,799,735	-				+0.1
2,799,749	-				+0.4
2,799,893	-				-0.3
2,799,898	-				-0.4
2,799,927	+				-0.1
2,799,927	-				-0.2
2,799,928	-				+0.4
2,799,959	-				+0.4
2,799,959	-				+0.6
2,799,968	+				-0.0
2,800,038	+				+0.4
2,800,132	+				-0.2
2,800,163	-				-0.9
2,800,176	+				+0.2
2,800,187	+				+0.3
2,800,240	-		CSW01_13160	0.11	+1.0
2,800,263	+		CSW01_13160	0.12	-0.3
2,800,263	+		CSW01_13160	0.12	-0.2
2,800,263	+		CSW01_13160	0.12	-0.1
2,800,263	+		CSW01_13160	0.12	+0.7
2,800,271	-		CSW01_13160	0.13	+0.6
2,800,286	-		CSW01_13160	0.14	+0.2
2,800,286	-		CSW01_13160	0.14	-1.0
2,800,307	+		CSW01_13160	0.15	+1.2
2,800,307	+		CSW01_13160	0.15	-0.6
2,800,307	+		CSW01_13160	0.15	+0.2
2,800,315	-		CSW01_13160	0.15	-0.9
2,800,355	+		CSW01_13160	0.17	+0.5
2,800,355	+		CSW01_13160	0.17	+0.6
2,800,363	-		CSW01_13160	0.18	+0.1
2,800,363	-		CSW01_13160	0.18	+1.1
2,800,363	-		CSW01_13160	0.18	+0.3
2,800,382	-		CSW01_13160	0.19	-0.2
2,800,421	-		CSW01_13160	0.21	+0.5
2,800,437	-		CSW01_13160	0.22	+0.5
2,800,448	+		CSW01_13160	0.22	-1.6
2,800,455	-		CSW01_13160	0.23	+0.4
2,800,455	-		CSW01_13160	0.23	+1.1
2,800,469	+		CSW01_13160	0.23	-0.5
2,800,490	+		CSW01_13160	0.24	-0.3
2,800,498	-		CSW01_13160	0.25	-0.8
2,800,670	-		CSW01_13160	0.34	-0.3
2,800,706	-		CSW01_13160	0.36	-1.1
2,800,706	-		CSW01_13160	0.36	+0.4
2,800,765	+		CSW01_13160	0.39	-0.4
2,800,765	+		CSW01_13160	0.39	+0.1
2,800,773	-		CSW01_13160	0.40	+1.0
2,800,773	-		CSW01_13160	0.40	-1.0
2,800,797	-		CSW01_13160	0.41	+0.4
2,800,812	-		CSW01_13160	0.42	+0.0
2,800,894	-		CSW01_13160	0.46	+0.3
2,800,968	+		CSW01_13160	0.50	+0.0
2,800,968	+		CSW01_13160	0.50	+0.8
2,800,991	+		CSW01_13160	0.51	+0.4
2,800,999	-		CSW01_13160	0.52	+0.2
2,801,031	+		CSW01_13160	0.53	-1.0
2,801,075	+		CSW01_13160	0.56	-0.4
2,801,133	+		CSW01_13160	0.59	+0.3
2,801,141	-		CSW01_13160	0.59	-2.0
2,801,141	-		CSW01_13160	0.59	-0.3
2,801,167	-		CSW01_13160	0.61	+0.9
2,801,167	-		CSW01_13160	0.61	+1.8
2,801,167	-		CSW01_13160	0.61	-0.3
2,801,304	-		CSW01_13160	0.68	+0.3
2,801,312	-		CSW01_13160	0.68	+0.3
2,801,336	-		CSW01_13160	0.70	-0.2
2,801,336	-		CSW01_13160	0.70	+0.6
2,801,388	+		CSW01_13160	0.72	-0.3
2,801,388	+		CSW01_13160	0.72	+0.9
2,801,388	+		CSW01_13160	0.72	+0.7
2,801,388	+		CSW01_13160	0.72	+0.0
2,801,388	+		CSW01_13160	0.72	+0.4
2,801,388	+		CSW01_13160	0.72	-0.5
2,801,388	+		CSW01_13160	0.72	-0.4
2,801,396	-		CSW01_13160	0.73	+0.4
2,801,396	-		CSW01_13160	0.73	-0.1
2,801,396	-		CSW01_13160	0.73	-0.7
2,801,396	-		CSW01_13160	0.73	-0.2
2,801,396	-		CSW01_13160	0.73	+2.0
2,801,396	-		CSW01_13160	0.73	-0.2
2,801,396	-		CSW01_13160	0.73	+0.0
2,801,396	-		CSW01_13160	0.73	+0.6
2,801,435	+		CSW01_13160	0.75	-0.2
2,801,438	+		CSW01_13160	0.75	-0.4
2,801,448	+		CSW01_13160	0.76	+0.0
2,801,453	+		CSW01_13160	0.76	+0.0
2,801,461	-		CSW01_13160	0.76	+0.6
2,801,461	-		CSW01_13160	0.76	+0.4
2,801,490	+		CSW01_13160	0.78	+0.4
2,801,532	+		CSW01_13160	0.80	+0.6
2,801,540	-		CSW01_13160	0.81	+0.8
2,801,540	-		CSW01_13160	0.81	+0.3
2,801,542	+		CSW01_13160	0.81	-0.2
2,801,547	+		CSW01_13160	0.81	+1.0
2,801,549	+		CSW01_13160	0.81	-0.6
2,801,624	-		CSW01_13160	0.85	-1.0
2,801,647	+		CSW01_13160	0.86	+0.9
2,801,655	-		CSW01_13160	0.87	-0.2
2,801,655	-		CSW01_13160	0.87	-0.2
2,801,655	-		CSW01_13160	0.87	-0.0
2,801,680	+		CSW01_13160	0.88	-0.5
2,801,714	-		CSW01_13160	0.90	-0.6
2,801,740	+				+0.2
2,801,772	+				+1.3
2,801,795	+				+1.2
2,801,807	-				-0.7
2,801,813	+				+0.4
2,801,813	+				-0.3
2,801,815	-				+0.2
2,801,870	+				+0.3
2,801,878	-				-0.3
2,801,984	+				+0.4
2,801,993	-		CSW01_13165	0.10	+0.5
2,801,993	-		CSW01_13165	0.10	+0.8
2,802,029	+		CSW01_13165	0.16	+0.6
2,802,029	+		CSW01_13165	0.16	+0.8
2,802,051	-		CSW01_13165	0.19	+1.4
2,802,127	-		CSW01_13165	0.31	+0.4
2,802,136	-		CSW01_13165	0.33	-0.4
2,802,136	-		CSW01_13165	0.33	+0.4
2,802,185	-		CSW01_13165	0.40	+0.9
2,802,191	+		CSW01_13165	0.41	-0.3
2,802,199	-		CSW01_13165	0.43	+0.8
2,802,199	-		CSW01_13165	0.43	+0.7
2,802,217	+		CSW01_13165	0.45	+0.8
2,802,217	+		CSW01_13165	0.45	-0.2
2,802,225	-		CSW01_13165	0.47	-0.3
2,802,225	-		CSW01_13165	0.47	+0.1
2,802,227	+		CSW01_13165	0.47	+1.2
2,802,227	+		CSW01_13165	0.47	+0.0
2,802,236	-		CSW01_13165	0.48	+1.1
2,802,241	+		CSW01_13165	0.49	+1.1
2,802,273	+		CSW01_13165	0.54	+0.2
2,802,310	+		CSW01_13165	0.60	+0.5
2,802,318	-		CSW01_13165	0.61	-0.5
2,802,318	-		CSW01_13165	0.61	+0.9
2,802,318	-		CSW01_13165	0.61	+0.2
2,802,318	-		CSW01_13165	0.61	+0.8
2,802,318	-		CSW01_13165	0.61	+0.9
2,802,338	+		CSW01_13165	0.64	+1.1
2,802,348	+		CSW01_13165	0.66	+0.6
2,802,481	-		CSW01_13165	0.87	+1.0
2,802,481	-		CSW01_13165	0.87	+1.2
2,802,573	+				+0.2
2,802,573	+				-0.1
2,802,573	+				+0.1
2,802,581	-				-1.0
2,802,581	-				+0.4
2,802,581	-				-0.8
2,802,581	-				+0.3
2,802,780	+				+0.4