Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08895

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08885 and CSW01_08890 are separated by 27 nucleotidesCSW01_08890 and CSW01_08895 are separated by 64 nucleotidesCSW01_08895 and CSW01_08900 are separated by 14 nucleotides CSW01_08885: CSW01_08885 - hypothetical protein, at 1,916,957 to 1,920,619 _08885 CSW01_08890: CSW01_08890 - YafY family transcriptional regulator, at 1,920,647 to 1,921,507 _08890 CSW01_08895: CSW01_08895 - kelch domain-containing protein, at 1,921,572 to 1,922,642 _08895 CSW01_08900: CSW01_08900 - N-acetylneuraminate epimerase, at 1,922,657 to 1,923,811 _08900 Position (kb) 1921 1922 1923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1920.596 kb on + strandat 1920.596 kb on + strandat 1920.604 kb on - strandat 1920.604 kb on - strandat 1920.631 kb on + strandat 1920.659 kb on - strandat 1920.659 kb on - strandat 1920.679 kb on - strandat 1920.774 kb on + strand, within CSW01_08890at 1920.792 kb on - strand, within CSW01_08890at 1920.805 kb on + strand, within CSW01_08890at 1920.838 kb on + strand, within CSW01_08890at 1920.846 kb on - strand, within CSW01_08890at 1920.846 kb on - strand, within CSW01_08890at 1920.866 kb on - strand, within CSW01_08890at 1920.866 kb on - strand, within CSW01_08890at 1920.870 kb on + strand, within CSW01_08890at 1920.877 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.950 kb on - strand, within CSW01_08890at 1920.950 kb on - strand, within CSW01_08890at 1920.951 kb on + strand, within CSW01_08890at 1920.971 kb on - strand, within CSW01_08890at 1920.971 kb on - strand, within CSW01_08890at 1921.016 kb on + strand, within CSW01_08890at 1921.018 kb on + strand, within CSW01_08890at 1921.024 kb on - strand, within CSW01_08890at 1921.036 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.161 kb on + strand, within CSW01_08890at 1921.171 kb on + strand, within CSW01_08890at 1921.171 kb on + strand, within CSW01_08890at 1921.179 kb on - strand, within CSW01_08890at 1921.251 kb on - strand, within CSW01_08890at 1921.281 kb on + strand, within CSW01_08890at 1921.281 kb on + strand, within CSW01_08890at 1921.289 kb on - strand, within CSW01_08890at 1921.293 kb on + strand, within CSW01_08890at 1921.293 kb on + strand, within CSW01_08890at 1921.459 kb on - strandat 1921.459 kb on - strandat 1921.463 kb on + strandat 1921.463 kb on + strandat 1921.491 kb on - strandat 1921.562 kb on - strandat 1921.562 kb on - strandat 1921.612 kb on + strandat 1921.612 kb on + strandat 1921.667 kb on + strandat 1921.674 kb on + strandat 1921.675 kb on - strandat 1921.814 kb on + strand, within CSW01_08895at 1921.898 kb on + strand, within CSW01_08895at 1921.931 kb on - strand, within CSW01_08895at 1921.956 kb on - strand, within CSW01_08895at 1921.960 kb on + strand, within CSW01_08895at 1921.971 kb on + strand, within CSW01_08895at 1921.979 kb on - strand, within CSW01_08895at 1921.980 kb on + strand, within CSW01_08895at 1921.981 kb on + strand, within CSW01_08895at 1921.988 kb on - strand, within CSW01_08895at 1921.989 kb on - strand, within CSW01_08895at 1921.990 kb on - strand, within CSW01_08895at 1921.990 kb on - strand, within CSW01_08895at 1922.046 kb on - strand, within CSW01_08895at 1922.048 kb on - strand, within CSW01_08895at 1922.057 kb on + strand, within CSW01_08895at 1922.069 kb on + strand, within CSW01_08895at 1922.074 kb on + strand, within CSW01_08895at 1922.077 kb on - strand, within CSW01_08895at 1922.079 kb on - strand, within CSW01_08895at 1922.081 kb on + strand, within CSW01_08895at 1922.084 kb on - strand, within CSW01_08895at 1922.087 kb on - strand, within CSW01_08895at 1922.093 kb on + strand, within CSW01_08895at 1922.093 kb on + strand, within CSW01_08895at 1922.101 kb on - strand, within CSW01_08895at 1922.278 kb on - strand, within CSW01_08895at 1922.278 kb on - strand, within CSW01_08895at 1922.286 kb on - strand, within CSW01_08895at 1922.289 kb on - strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.319 kb on + strand, within CSW01_08895at 1922.327 kb on - strand, within CSW01_08895at 1922.327 kb on - strand, within CSW01_08895at 1922.340 kb on + strand, within CSW01_08895at 1922.354 kb on + strand, within CSW01_08895at 1922.362 kb on - strand, within CSW01_08895at 1922.388 kb on + strand, within CSW01_08895at 1922.394 kb on + strand, within CSW01_08895at 1922.397 kb on + strand, within CSW01_08895at 1922.397 kb on + strand, within CSW01_08895at 1922.402 kb on - strand, within CSW01_08895at 1922.426 kb on + strand, within CSW01_08895at 1922.429 kb on + strand, within CSW01_08895at 1922.437 kb on - strand, within CSW01_08895at 1922.443 kb on + strand, within CSW01_08895at 1922.450 kb on - strand, within CSW01_08895at 1922.450 kb on - strand, within CSW01_08895at 1922.451 kb on - strand, within CSW01_08895at 1922.451 kb on - strand, within CSW01_08895at 1922.452 kb on + strand, within CSW01_08895at 1922.490 kb on + strand, within CSW01_08895at 1922.498 kb on - strand, within CSW01_08895at 1922.545 kb on + strandat 1922.555 kb on - strandat 1922.586 kb on - strandat 1922.613 kb on - strandat 1922.638 kb on + strandat 1922.668 kb on + strandat 1922.674 kb on + strandat 1922.704 kb on - strandat 1922.705 kb on - strandat 1922.712 kb on - strandat 1922.712 kb on - strandat 1922.756 kb on + strandat 1922.783 kb on + strand, within CSW01_08900at 1922.786 kb on - strand, within CSW01_08900at 1922.789 kb on + strand, within CSW01_08900at 1922.867 kb on + strand, within CSW01_08900at 1922.869 kb on - strand, within CSW01_08900at 1922.875 kb on - strand, within CSW01_08900at 1922.875 kb on - strand, within CSW01_08900at 1922.947 kb on - strand, within CSW01_08900at 1922.984 kb on + strand, within CSW01_08900at 1922.986 kb on + strand, within CSW01_08900at 1922.992 kb on - strand, within CSW01_08900at 1922.999 kb on + strand, within CSW01_08900at 1923.005 kb on + strand, within CSW01_08900at 1923.012 kb on + strand, within CSW01_08900at 1923.067 kb on + strand, within CSW01_08900at 1923.067 kb on + strand, within CSW01_08900at 1923.077 kb on + strand, within CSW01_08900at 1923.095 kb on - strand, within CSW01_08900at 1923.099 kb on + strand, within CSW01_08900at 1923.104 kb on + strand, within CSW01_08900at 1923.104 kb on + strand, within CSW01_08900at 1923.107 kb on - strand, within CSW01_08900at 1923.109 kb on + strand, within CSW01_08900at 1923.109 kb on + strand, within CSW01_08900at 1923.109 kb on + strand, within CSW01_08900at 1923.109 kb on + strand, within CSW01_08900at 1923.114 kb on + strand, within CSW01_08900at 1923.117 kb on - strand, within CSW01_08900at 1923.122 kb on - strand, within CSW01_08900at 1923.147 kb on + strand, within CSW01_08900at 1923.147 kb on + strand, within CSW01_08900at 1923.155 kb on - strand, within CSW01_08900at 1923.159 kb on + strand, within CSW01_08900at 1923.169 kb on + strand, within CSW01_08900at 1923.169 kb on + strand, within CSW01_08900at 1923.169 kb on + strand, within CSW01_08900at 1923.177 kb on - strand, within CSW01_08900at 1923.235 kb on - strand, within CSW01_08900at 1923.274 kb on + strand, within CSW01_08900at 1923.288 kb on - strand, within CSW01_08900at 1923.344 kb on + strand, within CSW01_08900at 1923.344 kb on + strand, within CSW01_08900at 1923.404 kb on - strand, within CSW01_08900at 1923.502 kb on + strand, within CSW01_08900at 1923.502 kb on + strand, within CSW01_08900at 1923.510 kb on - strand, within CSW01_08900at 1923.510 kb on - strand, within CSW01_08900at 1923.564 kb on + strand, within CSW01_08900at 1923.566 kb on + strand, within CSW01_08900at 1923.571 kb on + strand, within CSW01_08900at 1923.579 kb on - strand, within CSW01_08900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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1,920,596 + +0.3
1,920,596 + +0.4
1,920,604 - +0.5
1,920,604 - +1.8
1,920,631 + +0.6
1,920,659 - -0.3
1,920,659 - +0.4
1,920,679 - +0.0
1,920,774 + CSW01_08890 0.15 -0.5
1,920,792 - CSW01_08890 0.17 +1.5
1,920,805 + CSW01_08890 0.18 +0.3
1,920,838 + CSW01_08890 0.22 +0.7
1,920,846 - CSW01_08890 0.23 +0.9
1,920,846 - CSW01_08890 0.23 -1.5
1,920,866 - CSW01_08890 0.25 -0.1
1,920,866 - CSW01_08890 0.25 +0.3
1,920,870 + CSW01_08890 0.26 +0.5
1,920,877 + CSW01_08890 0.27 +0.0
1,920,942 + CSW01_08890 0.34 +0.5
1,920,942 + CSW01_08890 0.34 -0.6
1,920,942 + CSW01_08890 0.34 -0.4
1,920,942 + CSW01_08890 0.34 -0.1
1,920,950 - CSW01_08890 0.35 +0.0
1,920,950 - CSW01_08890 0.35 -0.7
1,920,951 + CSW01_08890 0.35 -0.0
1,920,971 - CSW01_08890 0.38 +0.2
1,920,971 - CSW01_08890 0.38 +1.2
1,921,016 + CSW01_08890 0.43 -0.2
1,921,018 + CSW01_08890 0.43 +0.2
1,921,024 - CSW01_08890 0.44 +0.5
1,921,036 + CSW01_08890 0.45 +0.3
1,921,136 + CSW01_08890 0.57 +1.3
1,921,136 + CSW01_08890 0.57 +0.5
1,921,136 + CSW01_08890 0.57 -0.0
1,921,136 + CSW01_08890 0.57 -0.7
1,921,136 + CSW01_08890 0.57 +0.5
1,921,136 + CSW01_08890 0.57 +0.1
1,921,136 + CSW01_08890 0.57 +0.4
1,921,136 + CSW01_08890 0.57 +0.9
1,921,136 + CSW01_08890 0.57 +0.4
1,921,136 + CSW01_08890 0.57 +1.1
1,921,136 + CSW01_08890 0.57 +0.2
1,921,136 + CSW01_08890 0.57 +0.5
1,921,144 - CSW01_08890 0.58 -1.9
1,921,144 - CSW01_08890 0.58 +0.9
1,921,144 - CSW01_08890 0.58 +0.3
1,921,144 - CSW01_08890 0.58 -1.0
1,921,144 - CSW01_08890 0.58 -1.5
1,921,144 - CSW01_08890 0.58 +0.6
1,921,144 - CSW01_08890 0.58 +0.1
1,921,144 - CSW01_08890 0.58 -0.4
1,921,144 - CSW01_08890 0.58 +0.5
1,921,144 - CSW01_08890 0.58 +0.4
1,921,144 - CSW01_08890 0.58 -0.7
1,921,144 - CSW01_08890 0.58 -0.5
1,921,161 + CSW01_08890 0.60 +0.1
1,921,171 + CSW01_08890 0.61 +0.8
1,921,171 + CSW01_08890 0.61 +0.4
1,921,179 - CSW01_08890 0.62 -0.8
1,921,251 - CSW01_08890 0.70 +0.0
1,921,281 + CSW01_08890 0.74 -0.4
1,921,281 + CSW01_08890 0.74 -0.3
1,921,289 - CSW01_08890 0.75 -0.9
1,921,293 + CSW01_08890 0.75 +0.9
1,921,293 + CSW01_08890 0.75 +0.1
1,921,459 - -0.1
1,921,459 - +0.2
1,921,463 + +0.7
1,921,463 + +0.4
1,921,491 - -0.1
1,921,562 - +0.2
1,921,562 - +0.1
1,921,612 + +0.5
1,921,612 + -0.1
1,921,667 + +0.4
1,921,674 + -0.2
1,921,675 - -0.5
1,921,814 + CSW01_08895 0.23 -0.2
1,921,898 + CSW01_08895 0.30 -0.2
1,921,931 - CSW01_08895 0.34 +0.7
1,921,956 - CSW01_08895 0.36 +0.2
1,921,960 + CSW01_08895 0.36 +0.1
1,921,971 + CSW01_08895 0.37 -0.0
1,921,979 - CSW01_08895 0.38 -0.2
1,921,980 + CSW01_08895 0.38 +0.4
1,921,981 + CSW01_08895 0.38 -0.6
1,921,988 - CSW01_08895 0.39 +0.0
1,921,989 - CSW01_08895 0.39 +0.0
1,921,990 - CSW01_08895 0.39 -0.4
1,921,990 - CSW01_08895 0.39 -0.1
1,922,046 - CSW01_08895 0.44 +1.1
1,922,048 - CSW01_08895 0.44 +0.0
1,922,057 + CSW01_08895 0.45 -0.1
1,922,069 + CSW01_08895 0.46 -0.2
1,922,074 + CSW01_08895 0.47 +0.4
1,922,077 - CSW01_08895 0.47 +0.3
1,922,079 - CSW01_08895 0.47 +1.3
1,922,081 + CSW01_08895 0.48 -0.3
1,922,084 - CSW01_08895 0.48 -0.2
1,922,087 - CSW01_08895 0.48 +0.4
1,922,093 + CSW01_08895 0.49 +0.6
1,922,093 + CSW01_08895 0.49 -0.2
1,922,101 - CSW01_08895 0.49 +0.1
1,922,278 - CSW01_08895 0.66 -0.1
1,922,278 - CSW01_08895 0.66 +0.1
1,922,286 - CSW01_08895 0.67 +0.0
1,922,289 - CSW01_08895 0.67 +0.7
1,922,319 + CSW01_08895 0.70 +0.1
1,922,319 + CSW01_08895 0.70 -1.2
1,922,319 + CSW01_08895 0.70 +0.4
1,922,319 + CSW01_08895 0.70 +0.3
1,922,319 + CSW01_08895 0.70 +0.8
1,922,319 + CSW01_08895 0.70 -0.8
1,922,319 + CSW01_08895 0.70 +0.7
1,922,319 + CSW01_08895 0.70 -0.5
1,922,319 + CSW01_08895 0.70 -0.1
1,922,327 - CSW01_08895 0.70 +0.2
1,922,327 - CSW01_08895 0.70 -2.0
1,922,340 + CSW01_08895 0.72 +0.4
1,922,354 + CSW01_08895 0.73 -0.1
1,922,362 - CSW01_08895 0.74 -0.1
1,922,388 + CSW01_08895 0.76 +0.2
1,922,394 + CSW01_08895 0.77 -0.4
1,922,397 + CSW01_08895 0.77 -0.3
1,922,397 + CSW01_08895 0.77 -0.8
1,922,402 - CSW01_08895 0.77 -0.2
1,922,426 + CSW01_08895 0.80 +0.5
1,922,429 + CSW01_08895 0.80 +0.3
1,922,437 - CSW01_08895 0.81 +0.0
1,922,443 + CSW01_08895 0.81 +0.6
1,922,450 - CSW01_08895 0.82 +0.1
1,922,450 - CSW01_08895 0.82 +0.8
1,922,451 - CSW01_08895 0.82 +1.0
1,922,451 - CSW01_08895 0.82 -0.2
1,922,452 + CSW01_08895 0.82 +1.1
1,922,490 + CSW01_08895 0.86 -0.5
1,922,498 - CSW01_08895 0.86 +0.6
1,922,545 + -1.6
1,922,555 - -0.1
1,922,586 - +0.8
1,922,613 - +0.1
1,922,638 + +0.3
1,922,668 + +0.2
1,922,674 + -0.2
1,922,704 - -0.4
1,922,705 - +1.4
1,922,712 - +0.1
1,922,712 - +0.0
1,922,756 + +0.3
1,922,783 + CSW01_08900 0.11 +0.1
1,922,786 - CSW01_08900 0.11 +1.1
1,922,789 + CSW01_08900 0.11 +0.8
1,922,867 + CSW01_08900 0.18 +0.3
1,922,869 - CSW01_08900 0.18 -1.6
1,922,875 - CSW01_08900 0.19 +0.2
1,922,875 - CSW01_08900 0.19 -1.1
1,922,947 - CSW01_08900 0.25 -0.2
1,922,984 + CSW01_08900 0.28 +0.7
1,922,986 + CSW01_08900 0.28 +0.1
1,922,992 - CSW01_08900 0.29 +0.2
1,922,999 + CSW01_08900 0.30 -0.4
1,923,005 + CSW01_08900 0.30 -3.0
1,923,012 + CSW01_08900 0.31 -0.5
1,923,067 + CSW01_08900 0.35 +0.3
1,923,067 + CSW01_08900 0.35 -2.1
1,923,077 + CSW01_08900 0.36 -0.1
1,923,095 - CSW01_08900 0.38 -0.5
1,923,099 + CSW01_08900 0.38 +0.1
1,923,104 + CSW01_08900 0.39 -0.2
1,923,104 + CSW01_08900 0.39 +1.6
1,923,107 - CSW01_08900 0.39 +1.6
1,923,109 + CSW01_08900 0.39 +0.0
1,923,109 + CSW01_08900 0.39 +0.0
1,923,109 + CSW01_08900 0.39 -0.2
1,923,109 + CSW01_08900 0.39 +0.5
1,923,114 + CSW01_08900 0.40 -0.0
1,923,117 - CSW01_08900 0.40 +0.5
1,923,122 - CSW01_08900 0.40 +0.0
1,923,147 + CSW01_08900 0.42 +1.4
1,923,147 + CSW01_08900 0.42 +0.2
1,923,155 - CSW01_08900 0.43 +0.9
1,923,159 + CSW01_08900 0.43 +0.5
1,923,169 + CSW01_08900 0.44 +0.9
1,923,169 + CSW01_08900 0.44 -0.1
1,923,169 + CSW01_08900 0.44 +0.9
1,923,177 - CSW01_08900 0.45 -0.3
1,923,235 - CSW01_08900 0.50 -0.2
1,923,274 + CSW01_08900 0.53 +1.6
1,923,288 - CSW01_08900 0.55 +2.0
1,923,344 + CSW01_08900 0.59 -0.2
1,923,344 + CSW01_08900 0.59 -0.3
1,923,404 - CSW01_08900 0.65 +1.5
1,923,502 + CSW01_08900 0.73 +1.2
1,923,502 + CSW01_08900 0.73 +0.9
1,923,510 - CSW01_08900 0.74 +0.1
1,923,510 - CSW01_08900 0.74 +0.1
1,923,564 + CSW01_08900 0.79 +1.1
1,923,566 + CSW01_08900 0.79 +0.5
1,923,571 + CSW01_08900 0.79 +0.1
1,923,579 - CSW01_08900 0.80 -0.9

Or see this region's nucleotide sequence