Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06385

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06375 and CSW01_06380 are separated by 170 nucleotidesCSW01_06380 and CSW01_06385 are separated by 134 nucleotidesCSW01_06385 and CSW01_06390 are separated by 206 nucleotides CSW01_06375: CSW01_06375 - hypothetical protein, at 1,335,418 to 1,335,594 _06375 CSW01_06380: CSW01_06380 - GTP cyclohydrolase II, at 1,335,765 to 1,336,415 _06380 CSW01_06385: CSW01_06385 - peptidase, at 1,336,550 to 1,337,857 _06385 CSW01_06390: CSW01_06390 - thiol oxidoreductase, at 1,338,064 to 1,339,449 _06390 Position (kb) 1336 1337 1338Strain fitness (log2 ratio) -1 0 1at 1335.635 kb on - strandat 1335.801 kb on + strandat 1335.811 kb on + strandat 1336.027 kb on + strand, within CSW01_06380at 1336.108 kb on + strand, within CSW01_06380at 1336.108 kb on + strand, within CSW01_06380at 1336.108 kb on + strand, within CSW01_06380at 1336.108 kb on + strand, within CSW01_06380at 1336.116 kb on - strand, within CSW01_06380at 1336.116 kb on - strand, within CSW01_06380at 1336.116 kb on - strand, within CSW01_06380at 1336.116 kb on - strand, within CSW01_06380at 1336.116 kb on - strand, within CSW01_06380at 1336.124 kb on - strand, within CSW01_06380at 1336.337 kb on - strand, within CSW01_06380at 1336.784 kb on + strand, within CSW01_06385at 1336.791 kb on - strand, within CSW01_06385at 1336.906 kb on - strand, within CSW01_06385at 1336.961 kb on + strand, within CSW01_06385at 1337.004 kb on + strand, within CSW01_06385at 1337.004 kb on + strand, within CSW01_06385at 1337.017 kb on - strand, within CSW01_06385at 1337.052 kb on + strand, within CSW01_06385at 1337.060 kb on - strand, within CSW01_06385at 1337.060 kb on - strand, within CSW01_06385at 1337.204 kb on + strand, within CSW01_06385at 1337.204 kb on + strand, within CSW01_06385at 1337.212 kb on - strand, within CSW01_06385at 1337.240 kb on + strand, within CSW01_06385at 1337.243 kb on - strand, within CSW01_06385at 1337.376 kb on - strand, within CSW01_06385at 1337.376 kb on - strand, within CSW01_06385at 1337.567 kb on - strand, within CSW01_06385at 1337.567 kb on - strand, within CSW01_06385at 1337.574 kb on + strand, within CSW01_06385at 1337.587 kb on - strand, within CSW01_06385at 1337.638 kb on + strand, within CSW01_06385at 1337.638 kb on + strand, within CSW01_06385at 1337.646 kb on - strand, within CSW01_06385at 1337.728 kb on + strandat 1337.895 kb on + strandat 1338.053 kb on + strandat 1338.259 kb on - strand, within CSW01_06390at 1338.394 kb on - strand, within CSW01_06390at 1338.643 kb on + strand, within CSW01_06390at 1338.659 kb on + strand, within CSW01_06390

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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1,335,635 - +0.1
1,335,801 + +0.1
1,335,811 + +0.1
1,336,027 + CSW01_06380 0.40 +1.6
1,336,108 + CSW01_06380 0.53 +0.1
1,336,108 + CSW01_06380 0.53 +0.1
1,336,108 + CSW01_06380 0.53 +0.1
1,336,108 + CSW01_06380 0.53 +1.6
1,336,116 - CSW01_06380 0.54 +1.1
1,336,116 - CSW01_06380 0.54 +0.1
1,336,116 - CSW01_06380 0.54 +0.1
1,336,116 - CSW01_06380 0.54 +1.1
1,336,116 - CSW01_06380 0.54 +0.1
1,336,124 - CSW01_06380 0.55 +1.1
1,336,337 - CSW01_06380 0.88 +0.1
1,336,784 + CSW01_06385 0.18 -0.1
1,336,791 - CSW01_06385 0.18 +0.8
1,336,906 - CSW01_06385 0.27 +1.0
1,336,961 + CSW01_06385 0.31 +0.6
1,337,004 + CSW01_06385 0.35 +0.1
1,337,004 + CSW01_06385 0.35 -0.2
1,337,017 - CSW01_06385 0.36 -0.7
1,337,052 + CSW01_06385 0.38 +1.0
1,337,060 - CSW01_06385 0.39 -1.0
1,337,060 - CSW01_06385 0.39 +0.5
1,337,204 + CSW01_06385 0.50 -0.1
1,337,204 + CSW01_06385 0.50 +0.2
1,337,212 - CSW01_06385 0.51 +0.6
1,337,240 + CSW01_06385 0.53 +0.7
1,337,243 - CSW01_06385 0.53 -1.1
1,337,376 - CSW01_06385 0.63 +0.5
1,337,376 - CSW01_06385 0.63 +0.9
1,337,567 - CSW01_06385 0.78 +0.6
1,337,567 - CSW01_06385 0.78 +1.5
1,337,574 + CSW01_06385 0.78 -0.0
1,337,587 - CSW01_06385 0.79 +1.0
1,337,638 + CSW01_06385 0.83 -0.3
1,337,638 + CSW01_06385 0.83 +0.1
1,337,646 - CSW01_06385 0.84 +0.6
1,337,728 + +1.0
1,337,895 + +0.6
1,338,053 + +0.5
1,338,259 - CSW01_06390 0.14 +0.2
1,338,394 - CSW01_06390 0.24 +0.3
1,338,643 + CSW01_06390 0.42 +0.7
1,338,659 + CSW01_06390 0.43 -0.3

Or see this region's nucleotide sequence