Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04875

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04860 and CSW01_04865 are separated by 6 nucleotidesCSW01_04865 and CSW01_04870 are separated by 2 nucleotidesCSW01_04870 and CSW01_04875 are separated by 68 nucleotidesCSW01_04875 and CSW01_04880 are separated by 5 nucleotidesCSW01_04880 and CSW01_04885 are separated by 176 nucleotides CSW01_04860: CSW01_04860 - penicillin-binding protein 2, at 1,012,954 to 1,014,870 _04860 CSW01_04865: CSW01_04865 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,014,877 to 1,015,347 _04865 CSW01_04870: CSW01_04870 - ribosome silencing factor, at 1,015,350 to 1,015,667 _04870 CSW01_04875: CSW01_04875 - DNA polymerase III subunit delta, at 1,015,736 to 1,016,764 _04875 CSW01_04880: CSW01_04880 - luciferase, at 1,016,770 to 1,017,384 _04880 CSW01_04885: CSW01_04885 - leucine--tRNA ligase, at 1,017,561 to 1,020,137 _04885 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -1 0 1at 1015.066 kb on - strand, within CSW01_04865at 1015.156 kb on - strand, within CSW01_04865at 1015.156 kb on - strand, within CSW01_04865at 1015.322 kb on - strandat 1015.488 kb on - strand, within CSW01_04870at 1015.554 kb on - strand, within CSW01_04870at 1015.684 kb on - strandat 1015.772 kb on - strandat 1017.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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1,015,066 - CSW01_04865 0.40 +0.5
1,015,156 - CSW01_04865 0.59 -0.3
1,015,156 - CSW01_04865 0.59 +0.3
1,015,322 - +0.1
1,015,488 - CSW01_04870 0.43 -0.1
1,015,554 - CSW01_04870 0.64 +1.1
1,015,684 - -0.2
1,015,772 - -0.5
1,017,534 - +0.4

Or see this region's nucleotide sequence