Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04430

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04420 and CSW01_04425 are separated by 54 nucleotidesCSW01_04425 and CSW01_04430 overlap by 32 nucleotidesCSW01_04430 and CSW01_04435 overlap by 10 nucleotides CSW01_04420: CSW01_04420 - prepilin-type cleavage/methylation domain-containing protein, at 922,465 to 922,908 _04420 CSW01_04425: CSW01_04425 - general secretion pathway protein GspH, at 922,963 to 923,517 _04425 CSW01_04430: CSW01_04430 - pilus assembly protein PilW, at 923,486 to 924,088 _04430 CSW01_04435: CSW01_04435 - hypothetical protein, at 924,079 to 925,320 _04435 Position (kb) 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2 3at 922.520 kb on + strand, within CSW01_04420at 922.520 kb on + strand, within CSW01_04420at 922.788 kb on - strand, within CSW01_04420at 923.013 kb on + strandat 923.192 kb on - strand, within CSW01_04425at 923.211 kb on + strand, within CSW01_04425at 923.217 kb on + strand, within CSW01_04425at 923.244 kb on + strand, within CSW01_04425at 923.247 kb on - strand, within CSW01_04425at 923.260 kb on - strand, within CSW01_04425at 923.293 kb on - strand, within CSW01_04425at 923.303 kb on - strand, within CSW01_04425at 923.342 kb on - strand, within CSW01_04425at 923.352 kb on + strand, within CSW01_04425at 923.368 kb on + strand, within CSW01_04425at 923.446 kb on + strand, within CSW01_04425at 923.446 kb on + strand, within CSW01_04425at 923.457 kb on + strand, within CSW01_04425at 923.526 kb on + strandat 923.526 kb on + strandat 923.534 kb on - strandat 923.534 kb on - strandat 923.534 kb on - strandat 923.581 kb on - strand, within CSW01_04430at 923.581 kb on - strand, within CSW01_04430at 923.584 kb on + strand, within CSW01_04430at 923.621 kb on + strand, within CSW01_04430at 923.664 kb on + strand, within CSW01_04430at 923.664 kb on + strand, within CSW01_04430at 923.672 kb on - strand, within CSW01_04430at 923.672 kb on - strand, within CSW01_04430at 923.702 kb on + strand, within CSW01_04430at 923.702 kb on + strand, within CSW01_04430at 923.710 kb on - strand, within CSW01_04430at 923.710 kb on - strand, within CSW01_04430at 923.737 kb on + strand, within CSW01_04430at 923.745 kb on - strand, within CSW01_04430at 923.755 kb on + strand, within CSW01_04430at 923.763 kb on - strand, within CSW01_04430at 923.872 kb on - strand, within CSW01_04430at 923.873 kb on + strand, within CSW01_04430at 923.881 kb on - strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.883 kb on + strand, within CSW01_04430at 923.887 kb on + strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.891 kb on - strand, within CSW01_04430at 923.965 kb on + strand, within CSW01_04430at 923.991 kb on + strand, within CSW01_04430at 924.043 kb on + strandat 924.043 kb on + strandat 924.057 kb on + strandat 924.057 kb on + strandat 924.072 kb on - strandat 924.123 kb on - strandat 924.128 kb on + strandat 924.138 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.192 kb on + strandat 924.218 kb on + strand, within CSW01_04435at 924.231 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.236 kb on + strand, within CSW01_04435at 924.239 kb on - strand, within CSW01_04435at 924.239 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.244 kb on - strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.246 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.250 kb on + strand, within CSW01_04435at 924.252 kb on + strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.254 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.258 kb on - strand, within CSW01_04435at 924.294 kb on + strand, within CSW01_04435at 924.297 kb on + strand, within CSW01_04435at 924.310 kb on + strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.320 kb on - strand, within CSW01_04435at 924.325 kb on - strand, within CSW01_04435at 924.329 kb on + strand, within CSW01_04435at 924.331 kb on - strand, within CSW01_04435at 924.361 kb on + strand, within CSW01_04435at 924.362 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.364 kb on - strand, within CSW01_04435at 924.374 kb on + strand, within CSW01_04435at 924.393 kb on - strand, within CSW01_04435at 924.566 kb on + strand, within CSW01_04435at 924.569 kb on - strand, within CSW01_04435at 924.579 kb on - strand, within CSW01_04435at 924.614 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.633 kb on + strand, within CSW01_04435at 924.633 kb on + strand, within CSW01_04435at 924.634 kb on + strand, within CSW01_04435at 924.641 kb on - strand, within CSW01_04435at 924.642 kb on - strand, within CSW01_04435at 924.642 kb on - strand, within CSW01_04435at 924.653 kb on + strand, within CSW01_04435at 924.661 kb on - strand, within CSW01_04435at 924.661 kb on - strand, within CSW01_04435at 924.663 kb on - strand, within CSW01_04435at 924.677 kb on - strand, within CSW01_04435at 924.677 kb on - strand, within CSW01_04435at 924.681 kb on + strand, within CSW01_04435at 924.730 kb on - strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.745 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.754 kb on - strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.877 kb on + strand, within CSW01_04435at 924.903 kb on - strand, within CSW01_04435at 924.910 kb on - strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.044 kb on + strand, within CSW01_04435at 925.049 kb on + strand, within CSW01_04435at 925.057 kb on - strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.073 kb on - strand, within CSW01_04435at 925.076 kb on + strand, within CSW01_04435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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922,520 + CSW01_04420 0.12 +0.4
922,520 + CSW01_04420 0.12 +0.1
922,788 - CSW01_04420 0.73 +0.3
923,013 + +0.0
923,192 - CSW01_04425 0.41 -2.0
923,211 + CSW01_04425 0.45 -0.2
923,217 + CSW01_04425 0.46 -0.3
923,244 + CSW01_04425 0.51 +1.0
923,247 - CSW01_04425 0.51 -0.6
923,260 - CSW01_04425 0.54 +0.4
923,293 - CSW01_04425 0.59 +0.4
923,303 - CSW01_04425 0.61 +0.2
923,342 - CSW01_04425 0.68 -0.1
923,352 + CSW01_04425 0.70 +0.0
923,368 + CSW01_04425 0.73 +0.9
923,446 + CSW01_04425 0.87 -0.5
923,446 + CSW01_04425 0.87 +1.4
923,457 + CSW01_04425 0.89 -0.9
923,526 + +0.4
923,526 + +0.5
923,534 - -0.3
923,534 - +0.2
923,534 - -0.3
923,581 - CSW01_04430 0.16 +0.5
923,581 - CSW01_04430 0.16 +0.0
923,584 + CSW01_04430 0.16 +1.4
923,621 + CSW01_04430 0.22 +0.1
923,664 + CSW01_04430 0.30 +0.4
923,664 + CSW01_04430 0.30 +0.3
923,672 - CSW01_04430 0.31 +1.1
923,672 - CSW01_04430 0.31 +0.6
923,702 + CSW01_04430 0.36 -0.3
923,702 + CSW01_04430 0.36 +0.1
923,710 - CSW01_04430 0.37 +0.7
923,710 - CSW01_04430 0.37 +0.3
923,737 + CSW01_04430 0.42 +0.2
923,745 - CSW01_04430 0.43 +0.5
923,755 + CSW01_04430 0.45 +0.3
923,763 - CSW01_04430 0.46 +2.9
923,872 - CSW01_04430 0.64 +0.5
923,873 + CSW01_04430 0.64 +0.7
923,881 - CSW01_04430 0.66 +0.5
923,883 + CSW01_04430 0.66 +1.2
923,883 + CSW01_04430 0.66 -0.5
923,883 + CSW01_04430 0.66 +0.5
923,883 + CSW01_04430 0.66 +1.3
923,887 + CSW01_04430 0.67 -0.4
923,891 - CSW01_04430 0.67 -0.8
923,891 - CSW01_04430 0.67 +0.5
923,891 - CSW01_04430 0.67 +0.5
923,891 - CSW01_04430 0.67 +0.1
923,965 + CSW01_04430 0.79 -0.3
923,991 + CSW01_04430 0.84 +0.1
924,043 + +0.1
924,043 + +0.7
924,057 + -0.4
924,057 + +0.3
924,072 - +0.5
924,123 - +0.9
924,128 + +0.1
924,138 + +0.5
924,192 + -0.2
924,192 + -1.5
924,192 + +0.3
924,192 + +0.6
924,218 + CSW01_04435 0.11 -0.2
924,231 + CSW01_04435 0.12 +0.6
924,236 + CSW01_04435 0.13 +0.3
924,236 + CSW01_04435 0.13 -0.1
924,236 + CSW01_04435 0.13 +0.5
924,236 + CSW01_04435 0.13 +0.6
924,236 + CSW01_04435 0.13 +0.1
924,236 + CSW01_04435 0.13 +0.4
924,236 + CSW01_04435 0.13 -1.4
924,239 - CSW01_04435 0.13 -0.6
924,239 - CSW01_04435 0.13 +0.8
924,244 - CSW01_04435 0.13 -0.9
924,244 - CSW01_04435 0.13 +0.3
924,244 - CSW01_04435 0.13 +0.4
924,244 - CSW01_04435 0.13 -0.6
924,244 - CSW01_04435 0.13 -1.1
924,244 - CSW01_04435 0.13 -0.5
924,244 - CSW01_04435 0.13 +0.1
924,244 - CSW01_04435 0.13 +0.2
924,244 - CSW01_04435 0.13 -0.2
924,246 + CSW01_04435 0.13 -0.5
924,246 + CSW01_04435 0.13 +0.7
924,246 + CSW01_04435 0.13 +0.9
924,246 + CSW01_04435 0.13 +0.3
924,250 + CSW01_04435 0.14 -0.6
924,250 + CSW01_04435 0.14 +1.2
924,250 + CSW01_04435 0.14 +0.2
924,250 + CSW01_04435 0.14 +0.5
924,250 + CSW01_04435 0.14 -0.0
924,250 + CSW01_04435 0.14 -0.2
924,250 + CSW01_04435 0.14 +0.3
924,250 + CSW01_04435 0.14 +0.5
924,250 + CSW01_04435 0.14 +2.0
924,250 + CSW01_04435 0.14 -0.0
924,250 + CSW01_04435 0.14 -0.9
924,250 + CSW01_04435 0.14 -0.2
924,250 + CSW01_04435 0.14 -0.0
924,250 + CSW01_04435 0.14 +0.4
924,250 + CSW01_04435 0.14 +0.2
924,252 + CSW01_04435 0.14 +0.2
924,254 - CSW01_04435 0.14 -0.6
924,254 - CSW01_04435 0.14 +0.6
924,254 - CSW01_04435 0.14 -0.8
924,254 - CSW01_04435 0.14 +0.2
924,254 - CSW01_04435 0.14 +0.2
924,254 - CSW01_04435 0.14 -0.2
924,258 - CSW01_04435 0.14 +2.4
924,258 - CSW01_04435 0.14 +1.3
924,258 - CSW01_04435 0.14 -0.1
924,258 - CSW01_04435 0.14 +0.5
924,258 - CSW01_04435 0.14 -1.1
924,294 + CSW01_04435 0.17 +0.3
924,297 + CSW01_04435 0.18 +0.1
924,310 + CSW01_04435 0.19 +1.7
924,318 - CSW01_04435 0.19 +0.4
924,318 - CSW01_04435 0.19 +0.5
924,320 - CSW01_04435 0.19 -0.2
924,325 - CSW01_04435 0.20 +0.2
924,329 + CSW01_04435 0.20 +0.4
924,331 - CSW01_04435 0.20 -0.5
924,361 + CSW01_04435 0.23 -0.1
924,362 + CSW01_04435 0.23 -0.1
924,363 + CSW01_04435 0.23 +0.7
924,363 + CSW01_04435 0.23 -1.6
924,364 - CSW01_04435 0.23 +1.5
924,374 + CSW01_04435 0.24 -0.1
924,393 - CSW01_04435 0.25 +2.0
924,566 + CSW01_04435 0.39 +0.5
924,569 - CSW01_04435 0.39 +0.3
924,579 - CSW01_04435 0.40 +0.1
924,614 - CSW01_04435 0.43 -0.2
924,619 - CSW01_04435 0.43 +0.1
924,619 - CSW01_04435 0.43 +0.4
924,619 - CSW01_04435 0.43 +1.5
924,633 + CSW01_04435 0.45 -1.6
924,633 + CSW01_04435 0.45 +0.3
924,634 + CSW01_04435 0.45 +0.3
924,641 - CSW01_04435 0.45 -0.2
924,642 - CSW01_04435 0.45 -0.5
924,642 - CSW01_04435 0.45 +0.2
924,653 + CSW01_04435 0.46 +0.7
924,661 - CSW01_04435 0.47 +0.4
924,661 - CSW01_04435 0.47 -0.1
924,663 - CSW01_04435 0.47 -0.0
924,677 - CSW01_04435 0.48 -0.8
924,677 - CSW01_04435 0.48 +1.0
924,681 + CSW01_04435 0.48 -0.2
924,730 - CSW01_04435 0.52 -0.5
924,734 + CSW01_04435 0.53 -0.2
924,734 + CSW01_04435 0.53 -0.0
924,734 + CSW01_04435 0.53 +0.7
924,734 + CSW01_04435 0.53 -0.6
924,734 + CSW01_04435 0.53 -1.0
924,742 - CSW01_04435 0.53 +0.3
924,742 - CSW01_04435 0.53 +0.7
924,742 - CSW01_04435 0.53 +0.6
924,745 + CSW01_04435 0.54 +0.1
924,746 + CSW01_04435 0.54 -0.0
924,746 + CSW01_04435 0.54 +1.1
924,746 + CSW01_04435 0.54 +0.8
924,754 - CSW01_04435 0.54 -1.0
924,822 + CSW01_04435 0.60 +1.0
924,822 + CSW01_04435 0.60 +0.3
924,822 + CSW01_04435 0.60 +0.2
924,822 + CSW01_04435 0.60 -0.2
924,830 - CSW01_04435 0.60 -0.6
924,830 - CSW01_04435 0.60 -0.3
924,830 - CSW01_04435 0.60 +0.8
924,877 + CSW01_04435 0.64 -1.1
924,903 - CSW01_04435 0.66 -0.2
924,910 - CSW01_04435 0.67 +0.8
925,014 + CSW01_04435 0.75 -0.8
925,014 + CSW01_04435 0.75 +1.0
925,014 + CSW01_04435 0.75 -1.4
925,014 + CSW01_04435 0.75 -0.1
925,014 + CSW01_04435 0.75 -1.1
925,014 + CSW01_04435 0.75 +1.2
925,014 + CSW01_04435 0.75 +0.3
925,022 - CSW01_04435 0.76 +0.3
925,022 - CSW01_04435 0.76 -0.2
925,022 - CSW01_04435 0.76 -0.3
925,044 + CSW01_04435 0.78 -0.6
925,049 + CSW01_04435 0.78 +0.3
925,057 - CSW01_04435 0.79 -1.1
925,060 + CSW01_04435 0.79 +0.3
925,060 + CSW01_04435 0.79 +1.0
925,060 + CSW01_04435 0.79 +0.0
925,068 - CSW01_04435 0.80 -0.2
925,068 - CSW01_04435 0.80 +0.3
925,068 - CSW01_04435 0.80 -0.7
925,073 - CSW01_04435 0.80 +0.4
925,076 + CSW01_04435 0.80 +0.8

Or see this region's nucleotide sequence