Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04395

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04380 and CSW01_04385 overlap by 4 nucleotidesCSW01_04385 and CSW01_04390 are separated by 77 nucleotidesCSW01_04390 and CSW01_04395 are separated by 107 nucleotidesCSW01_04395 and CSW01_04400 are separated by 129 nucleotides CSW01_04380: CSW01_04380 - ubiquinone-binding protein, at 914,134 to 914,568 _04380 CSW01_04385: CSW01_04385 - RnfH family protein, at 914,565 to 914,876 _04385 CSW01_04390: CSW01_04390 - outer membrane protein assembly factor BamE, at 914,954 to 915,364 _04390 CSW01_04395: CSW01_04395 - DNA repair protein RecN, at 915,472 to 917,136 _04395 CSW01_04400: CSW01_04400 - NAD(+) kinase, at 917,266 to 918,150 _04400 Position (kb) 915 916 917 918Strain fitness (log2 ratio) -1 0 1 2at 914.553 kb on + strandat 914.553 kb on + strandat 914.852 kb on - strandat 914.852 kb on - strandat 914.857 kb on - strandat 914.918 kb on + strandat 914.957 kb on + strandat 915.003 kb on + strand, within CSW01_04390at 915.087 kb on + strand, within CSW01_04390at 915.095 kb on - strand, within CSW01_04390at 915.233 kb on + strand, within CSW01_04390at 915.373 kb on - strandat 915.395 kb on + strandat 915.395 kb on + strandat 915.487 kb on - strandat 915.538 kb on - strandat 915.678 kb on + strand, within CSW01_04395at 915.716 kb on - strand, within CSW01_04395at 915.740 kb on + strand, within CSW01_04395at 915.750 kb on + strand, within CSW01_04395at 915.750 kb on + strand, within CSW01_04395at 915.797 kb on + strand, within CSW01_04395at 915.857 kb on - strand, within CSW01_04395at 915.859 kb on + strand, within CSW01_04395at 915.867 kb on - strand, within CSW01_04395at 915.873 kb on + strand, within CSW01_04395at 915.922 kb on + strand, within CSW01_04395at 915.928 kb on - strand, within CSW01_04395at 915.937 kb on + strand, within CSW01_04395at 915.937 kb on + strand, within CSW01_04395at 915.945 kb on - strand, within CSW01_04395at 915.945 kb on - strand, within CSW01_04395at 915.998 kb on - strand, within CSW01_04395at 916.055 kb on - strand, within CSW01_04395at 916.076 kb on - strand, within CSW01_04395at 916.142 kb on - strand, within CSW01_04395at 916.194 kb on - strand, within CSW01_04395at 916.223 kb on - strand, within CSW01_04395at 916.230 kb on + strand, within CSW01_04395at 916.230 kb on + strand, within CSW01_04395at 916.233 kb on - strand, within CSW01_04395at 916.287 kb on + strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.312 kb on + strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.339 kb on - strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.388 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.404 kb on + strand, within CSW01_04395at 916.404 kb on + strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.413 kb on - strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.438 kb on - strand, within CSW01_04395at 916.440 kb on + strand, within CSW01_04395at 916.448 kb on - strand, within CSW01_04395at 916.511 kb on - strand, within CSW01_04395at 916.651 kb on + strand, within CSW01_04395at 916.664 kb on + strand, within CSW01_04395at 916.672 kb on - strand, within CSW01_04395at 916.672 kb on - strand, within CSW01_04395at 916.677 kb on + strand, within CSW01_04395at 916.682 kb on - strand, within CSW01_04395at 916.711 kb on - strand, within CSW01_04395at 916.729 kb on - strand, within CSW01_04395at 916.731 kb on + strand, within CSW01_04395at 916.781 kb on + strand, within CSW01_04395at 916.800 kb on + strand, within CSW01_04395at 916.808 kb on - strand, within CSW01_04395at 916.808 kb on - strand, within CSW01_04395at 916.831 kb on + strand, within CSW01_04395at 916.839 kb on - strand, within CSW01_04395at 916.860 kb on + strand, within CSW01_04395at 916.875 kb on - strand, within CSW01_04395at 916.893 kb on + strand, within CSW01_04395at 916.893 kb on + strand, within CSW01_04395at 916.901 kb on - strand, within CSW01_04395at 916.922 kb on - strand, within CSW01_04395at 916.952 kb on + strand, within CSW01_04395at 917.037 kb on - strandat 917.052 kb on - strandat 917.231 kb on + strandat 917.231 kb on + strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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914,553 + +0.2
914,553 + +0.8
914,852 - +0.7
914,852 - +0.4
914,857 - -0.3
914,918 + +0.7
914,957 + +1.0
915,003 + CSW01_04390 0.12 -0.2
915,087 + CSW01_04390 0.32 -0.3
915,095 - CSW01_04390 0.34 -1.6
915,233 + CSW01_04390 0.68 -1.5
915,373 - -1.0
915,395 + +0.8
915,395 + -0.1
915,487 - -0.9
915,538 - -0.2
915,678 + CSW01_04395 0.12 +0.2
915,716 - CSW01_04395 0.15 -1.3
915,740 + CSW01_04395 0.16 -0.2
915,750 + CSW01_04395 0.17 -1.1
915,750 + CSW01_04395 0.17 -1.6
915,797 + CSW01_04395 0.20 -0.7
915,857 - CSW01_04395 0.23 -1.3
915,859 + CSW01_04395 0.23 -0.3
915,867 - CSW01_04395 0.24 -0.1
915,873 + CSW01_04395 0.24 -0.4
915,922 + CSW01_04395 0.27 -1.1
915,928 - CSW01_04395 0.27 +2.4
915,937 + CSW01_04395 0.28 -0.3
915,937 + CSW01_04395 0.28 -0.6
915,945 - CSW01_04395 0.28 -0.5
915,945 - CSW01_04395 0.28 -0.9
915,998 - CSW01_04395 0.32 +0.3
916,055 - CSW01_04395 0.35 +0.5
916,076 - CSW01_04395 0.36 -0.1
916,142 - CSW01_04395 0.40 -0.6
916,194 - CSW01_04395 0.43 +1.7
916,223 - CSW01_04395 0.45 -1.1
916,230 + CSW01_04395 0.46 +0.9
916,230 + CSW01_04395 0.46 -0.3
916,233 - CSW01_04395 0.46 +0.5
916,287 + CSW01_04395 0.49 +0.7
916,295 - CSW01_04395 0.49 -0.1
916,295 - CSW01_04395 0.49 -0.3
916,295 - CSW01_04395 0.49 +0.5
916,312 + CSW01_04395 0.50 +0.3
916,337 - CSW01_04395 0.52 -0.8
916,337 - CSW01_04395 0.52 +0.1
916,337 - CSW01_04395 0.52 +0.3
916,339 - CSW01_04395 0.52 +0.1
916,386 + CSW01_04395 0.55 -0.3
916,386 + CSW01_04395 0.55 +1.1
916,386 + CSW01_04395 0.55 -0.1
916,388 - CSW01_04395 0.55 -0.5
916,394 - CSW01_04395 0.55 +1.8
916,394 - CSW01_04395 0.55 +1.1
916,394 - CSW01_04395 0.55 -0.0
916,404 + CSW01_04395 0.56 +0.3
916,404 + CSW01_04395 0.56 +0.3
916,412 - CSW01_04395 0.56 +0.5
916,412 - CSW01_04395 0.56 -0.5
916,412 - CSW01_04395 0.56 -0.0
916,413 - CSW01_04395 0.57 -0.2
916,430 + CSW01_04395 0.58 -0.3
916,430 + CSW01_04395 0.58 +1.2
916,430 + CSW01_04395 0.58 +1.7
916,430 + CSW01_04395 0.58 +0.7
916,430 + CSW01_04395 0.58 -0.4
916,438 - CSW01_04395 0.58 +0.5
916,440 + CSW01_04395 0.58 +1.0
916,448 - CSW01_04395 0.59 -0.2
916,511 - CSW01_04395 0.62 -0.5
916,651 + CSW01_04395 0.71 -0.4
916,664 + CSW01_04395 0.72 +0.8
916,672 - CSW01_04395 0.72 -0.6
916,672 - CSW01_04395 0.72 +0.2
916,677 + CSW01_04395 0.72 +0.1
916,682 - CSW01_04395 0.73 -0.5
916,711 - CSW01_04395 0.74 +0.7
916,729 - CSW01_04395 0.75 -0.1
916,731 + CSW01_04395 0.76 -0.8
916,781 + CSW01_04395 0.79 +0.9
916,800 + CSW01_04395 0.80 +1.3
916,808 - CSW01_04395 0.80 +0.5
916,808 - CSW01_04395 0.80 -0.8
916,831 + CSW01_04395 0.82 +0.3
916,839 - CSW01_04395 0.82 -0.6
916,860 + CSW01_04395 0.83 -0.1
916,875 - CSW01_04395 0.84 +0.7
916,893 + CSW01_04395 0.85 -0.2
916,893 + CSW01_04395 0.85 +0.2
916,901 - CSW01_04395 0.86 -0.2
916,922 - CSW01_04395 0.87 -0.1
916,952 + CSW01_04395 0.89 -0.1
917,037 - -1.4
917,052 - +1.9
917,231 + +0.2
917,231 + +0.1
917,239 - -0.0
917,239 - +0.0
917,239 - +0.2

Or see this region's nucleotide sequence