Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03660

Experiment: LB_Anaerobic_18HR_ZN20A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03655 and CSW01_03660 are separated by 9 nucleotidesCSW01_03660 and CSW01_03665 are separated by 77 nucleotidesCSW01_03665 and CSW01_03670 overlap by 80 nucleotides CSW01_03655: CSW01_03655 - murein transglycosylase, at 747,129 to 749,075 _03655 CSW01_03660: CSW01_03660 - trp operon repressor, at 749,085 to 749,441 _03660 CSW01_03665: CSW01_03665 - non-canonical purine NTP phosphatase, at 749,519 to 750,070 _03665 CSW01_03670: CSW01_03670 - biofilm architecture maintenance protein MbaA, at 749,991 to 752,366 _03670 Position (kb) 749 750Strain fitness (log2 ratio) -1 0 1 2at 748.099 kb on + strand, within CSW01_03655at 748.174 kb on - strand, within CSW01_03655at 748.225 kb on - strand, within CSW01_03655at 748.279 kb on + strand, within CSW01_03655at 748.287 kb on - strand, within CSW01_03655at 748.335 kb on - strand, within CSW01_03655at 748.352 kb on + strand, within CSW01_03655at 748.360 kb on - strand, within CSW01_03655at 748.398 kb on + strand, within CSW01_03655at 748.472 kb on + strand, within CSW01_03655at 748.494 kb on + strand, within CSW01_03655at 748.615 kb on + strand, within CSW01_03655at 748.630 kb on + strand, within CSW01_03655at 748.630 kb on + strand, within CSW01_03655at 748.674 kb on - strand, within CSW01_03655at 748.674 kb on - strand, within CSW01_03655at 748.699 kb on + strand, within CSW01_03655at 748.735 kb on + strand, within CSW01_03655at 748.759 kb on + strand, within CSW01_03655at 748.760 kb on + strand, within CSW01_03655at 748.767 kb on - strand, within CSW01_03655at 748.768 kb on - strand, within CSW01_03655at 748.845 kb on - strand, within CSW01_03655at 748.845 kb on - strand, within CSW01_03655at 748.871 kb on + strand, within CSW01_03655at 748.879 kb on - strand, within CSW01_03655at 748.892 kb on + strandat 748.958 kb on - strandat 748.962 kb on + strandat 748.975 kb on + strandat 749.069 kb on + strandat 749.106 kb on + strandat 749.175 kb on - strand, within CSW01_03660at 749.194 kb on + strand, within CSW01_03660at 749.233 kb on + strand, within CSW01_03660at 749.241 kb on - strand, within CSW01_03660at 749.264 kb on + strand, within CSW01_03660at 749.285 kb on + strand, within CSW01_03660at 749.366 kb on + strand, within CSW01_03660at 749.397 kb on + strand, within CSW01_03660at 749.597 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.744 kb on + strand, within CSW01_03665at 749.752 kb on - strand, within CSW01_03665at 749.799 kb on - strand, within CSW01_03665at 749.800 kb on - strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.833 kb on + strand, within CSW01_03665at 749.834 kb on - strand, within CSW01_03665at 749.836 kb on + strand, within CSW01_03665at 749.854 kb on + strand, within CSW01_03665at 749.873 kb on + strand, within CSW01_03665at 749.881 kb on - strand, within CSW01_03665at 749.904 kb on + strand, within CSW01_03665at 749.932 kb on + strand, within CSW01_03665at 749.935 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.996 kb on - strandat 750.025 kb on + strandat 750.174 kb on - strandat 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.338 kb on - strand, within CSW01_03670at 750.338 kb on - strand, within CSW01_03670at 750.365 kb on - strand, within CSW01_03670at 750.403 kb on - strand, within CSW01_03670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
remove
748,099 + CSW01_03655 0.50 +0.4
748,174 - CSW01_03655 0.54 +2.2
748,225 - CSW01_03655 0.56 +0.4
748,279 + CSW01_03655 0.59 +0.7
748,287 - CSW01_03655 0.59 +1.1
748,335 - CSW01_03655 0.62 +0.9
748,352 + CSW01_03655 0.63 -0.0
748,360 - CSW01_03655 0.63 +0.2
748,398 + CSW01_03655 0.65 +0.6
748,472 + CSW01_03655 0.69 -0.0
748,494 + CSW01_03655 0.70 +0.6
748,615 + CSW01_03655 0.76 +0.4
748,630 + CSW01_03655 0.77 +0.8
748,630 + CSW01_03655 0.77 +0.5
748,674 - CSW01_03655 0.79 +0.6
748,674 - CSW01_03655 0.79 +0.4
748,699 + CSW01_03655 0.81 +1.0
748,735 + CSW01_03655 0.82 +0.1
748,759 + CSW01_03655 0.84 +0.3
748,760 + CSW01_03655 0.84 +0.8
748,767 - CSW01_03655 0.84 +0.8
748,768 - CSW01_03655 0.84 -0.8
748,845 - CSW01_03655 0.88 +1.1
748,845 - CSW01_03655 0.88 -0.3
748,871 + CSW01_03655 0.89 -1.7
748,879 - CSW01_03655 0.90 +0.8
748,892 + +0.7
748,958 - +0.1
748,962 + +0.9
748,975 + +0.6
749,069 + -0.5
749,106 + +0.8
749,175 - CSW01_03660 0.25 +1.0
749,194 + CSW01_03660 0.31 +0.3
749,233 + CSW01_03660 0.41 -0.7
749,241 - CSW01_03660 0.44 +0.7
749,264 + CSW01_03660 0.50 +0.4
749,285 + CSW01_03660 0.56 +1.0
749,366 + CSW01_03660 0.79 -0.0
749,397 + CSW01_03660 0.87 +0.5
749,597 + CSW01_03665 0.14 +0.3
749,655 + CSW01_03665 0.25 +0.4
749,655 + CSW01_03665 0.25 +1.5
749,734 + CSW01_03665 0.39 +0.4
749,734 + CSW01_03665 0.39 +0.5
749,744 + CSW01_03665 0.41 +1.4
749,752 - CSW01_03665 0.42 -0.4
749,799 - CSW01_03665 0.51 +0.1
749,800 - CSW01_03665 0.51 +0.4
749,826 + CSW01_03665 0.56 +0.1
749,826 + CSW01_03665 0.56 +0.7
749,833 + CSW01_03665 0.57 +0.4
749,834 - CSW01_03665 0.57 +0.4
749,836 + CSW01_03665 0.57 +0.8
749,854 + CSW01_03665 0.61 +0.3
749,873 + CSW01_03665 0.64 +0.8
749,881 - CSW01_03665 0.66 -1.0
749,904 + CSW01_03665 0.70 +0.8
749,932 + CSW01_03665 0.75 -0.1
749,935 - CSW01_03665 0.75 +0.3
749,986 - CSW01_03665 0.85 +1.4
749,986 - CSW01_03665 0.85 +0.8
749,996 - -0.1
750,025 + +0.3
750,174 - +1.0
750,330 + CSW01_03670 0.14 +0.1
750,330 + CSW01_03670 0.14 +0.1
750,330 + CSW01_03670 0.14 +0.8
750,330 + CSW01_03670 0.14 +0.4
750,338 - CSW01_03670 0.15 +0.7
750,338 - CSW01_03670 0.15 +0.3
750,365 - CSW01_03670 0.16 +0.5
750,403 - CSW01_03670 0.17 +0.7

Or see this region's nucleotide sequence