Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03280

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03275 and CSW01_03280 are separated by 207 nucleotidesCSW01_03280 and CSW01_03285 are separated by 72 nucleotides CSW01_03275: CSW01_03275 - hybrid sensor histidine kinase/response regulator, at 656,978 to 660,367 _03275 CSW01_03280: CSW01_03280 - 16S rRNA methyltransferase, at 660,575 to 661,597 _03280 CSW01_03285: CSW01_03285 - AI-2E family transporter, at 661,670 to 662,755 _03285 Position (kb) 660 661 662Strain fitness (log2 ratio) -1 0 1 2at 659.584 kb on + strand, within CSW01_03275at 659.617 kb on - strand, within CSW01_03275at 659.702 kb on + strand, within CSW01_03275at 659.730 kb on + strand, within CSW01_03275at 659.738 kb on - strand, within CSW01_03275at 659.763 kb on - strand, within CSW01_03275at 659.772 kb on + strand, within CSW01_03275at 659.777 kb on + strand, within CSW01_03275at 659.865 kb on + strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.932 kb on - strand, within CSW01_03275at 659.949 kb on - strand, within CSW01_03275at 659.981 kb on + strand, within CSW01_03275at 660.060 kb on - strandat 660.074 kb on - strandat 660.119 kb on + strandat 660.119 kb on + strandat 660.163 kb on - strandat 660.222 kb on + strandat 660.230 kb on - strandat 660.238 kb on + strandat 660.357 kb on + strandat 660.712 kb on + strand, within CSW01_03280at 660.790 kb on + strand, within CSW01_03280at 660.842 kb on - strand, within CSW01_03280at 660.897 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 661.011 kb on + strand, within CSW01_03280at 661.012 kb on - strand, within CSW01_03280at 661.249 kb on - strand, within CSW01_03280at 661.254 kb on - strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.358 kb on + strand, within CSW01_03280at 661.388 kb on - strand, within CSW01_03280at 661.403 kb on - strand, within CSW01_03280at 661.430 kb on - strand, within CSW01_03280at 661.448 kb on - strand, within CSW01_03280at 661.579 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.587 kb on - strandat 661.587 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.616 kb on - strandat 661.727 kb on - strandat 661.786 kb on + strand, within CSW01_03285at 661.802 kb on - strand, within CSW01_03285at 661.831 kb on + strand, within CSW01_03285at 661.832 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.841 kb on + strand, within CSW01_03285at 661.844 kb on - strand, within CSW01_03285at 661.849 kb on - strand, within CSW01_03285at 661.883 kb on - strand, within CSW01_03285at 661.961 kb on + strand, within CSW01_03285at 661.985 kb on - strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.066 kb on + strand, within CSW01_03285at 662.067 kb on + strand, within CSW01_03285at 662.120 kb on - strand, within CSW01_03285at 662.168 kb on + strand, within CSW01_03285at 662.171 kb on - strand, within CSW01_03285at 662.176 kb on - strand, within CSW01_03285at 662.217 kb on + strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.355 kb on + strand, within CSW01_03285at 662.363 kb on - strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.418 kb on - strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.454 kb on - strand, within CSW01_03285at 662.477 kb on + strand, within CSW01_03285at 662.484 kb on - strand, within CSW01_03285

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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659,584 + CSW01_03275 0.77 -0.1
659,617 - CSW01_03275 0.78 +0.9
659,702 + CSW01_03275 0.80 +0.5
659,730 + CSW01_03275 0.81 -0.3
659,738 - CSW01_03275 0.81 -0.1
659,763 - CSW01_03275 0.82 +0.6
659,772 + CSW01_03275 0.82 +0.4
659,777 + CSW01_03275 0.83 +0.3
659,865 + CSW01_03275 0.85 +0.2
659,916 - CSW01_03275 0.87 -0.2
659,916 - CSW01_03275 0.87 +0.1
659,932 - CSW01_03275 0.87 -0.0
659,949 - CSW01_03275 0.88 +2.3
659,981 + CSW01_03275 0.89 +0.2
660,060 - +0.7
660,074 - +0.1
660,119 + +0.4
660,119 + +0.2
660,163 - +0.9
660,222 + -0.0
660,230 - -0.3
660,238 + -0.6
660,357 + -0.3
660,712 + CSW01_03280 0.13 +0.4
660,790 + CSW01_03280 0.21 +0.5
660,842 - CSW01_03280 0.26 +0.5
660,897 + CSW01_03280 0.31 +0.5
660,953 + CSW01_03280 0.37 +0.8
660,953 + CSW01_03280 0.37 +0.6
660,961 - CSW01_03280 0.38 +0.7
660,961 - CSW01_03280 0.38 +0.7
660,961 - CSW01_03280 0.38 +0.3
660,961 - CSW01_03280 0.38 +0.3
661,011 + CSW01_03280 0.43 +0.7
661,012 - CSW01_03280 0.43 +1.7
661,249 - CSW01_03280 0.66 +0.6
661,254 - CSW01_03280 0.66 -0.0
661,287 + CSW01_03280 0.70 -0.3
661,287 + CSW01_03280 0.70 +0.1
661,358 + CSW01_03280 0.77 +0.8
661,388 - CSW01_03280 0.79 +0.5
661,403 - CSW01_03280 0.81 +0.3
661,430 - CSW01_03280 0.84 +0.5
661,448 - CSW01_03280 0.85 +0.0
661,579 + +0.6
661,584 + +0.3
661,584 + -0.3
661,584 + +0.6
661,584 + +1.1
661,584 + +0.6
661,584 + +0.5
661,587 - +1.4
661,587 - -0.1
661,592 - +0.7
661,592 - +0.5
661,592 - +0.5
661,592 - -0.4
661,616 - -1.3
661,727 - +0.7
661,786 + CSW01_03285 0.11 -1.7
661,802 - CSW01_03285 0.12 -0.0
661,831 + CSW01_03285 0.15 +1.7
661,832 - CSW01_03285 0.15 +0.4
661,839 - CSW01_03285 0.16 +0.6
661,839 - CSW01_03285 0.16 +0.2
661,841 + CSW01_03285 0.16 +0.0
661,844 - CSW01_03285 0.16 -0.1
661,849 - CSW01_03285 0.16 +0.6
661,883 - CSW01_03285 0.20 +0.7
661,961 + CSW01_03285 0.27 +0.2
661,985 - CSW01_03285 0.29 -0.0
662,019 + CSW01_03285 0.32 +0.8
662,019 + CSW01_03285 0.32 +0.5
662,066 + CSW01_03285 0.36 +0.7
662,067 + CSW01_03285 0.37 +1.9
662,120 - CSW01_03285 0.41 +0.4
662,168 + CSW01_03285 0.46 +1.6
662,171 - CSW01_03285 0.46 -0.1
662,176 - CSW01_03285 0.47 +0.3
662,217 + CSW01_03285 0.50 -0.1
662,225 - CSW01_03285 0.51 -0.1
662,225 - CSW01_03285 0.51 +0.0
662,355 + CSW01_03285 0.63 -0.8
662,363 - CSW01_03285 0.64 +0.1
662,393 + CSW01_03285 0.67 -0.6
662,393 + CSW01_03285 0.67 +0.4
662,418 - CSW01_03285 0.69 +0.3
662,420 + CSW01_03285 0.69 +0.1
662,420 + CSW01_03285 0.69 +0.9
662,454 - CSW01_03285 0.72 +0.2
662,477 + CSW01_03285 0.74 +0.2
662,484 - CSW01_03285 0.75 -0.1

Or see this region's nucleotide sequence