Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02705 and CSW01_02710 are separated by 496 nucleotides CSW01_02710 and CSW01_02715 are separated by 103 nucleotides
CSW01_02705: CSW01_02705 - transposase, at 539,149 to 539,561
_02705
CSW01_02710: CSW01_02710 - chemotaxis protein, at 540,058 to 541,647
_02710
CSW01_02715: CSW01_02715 - transcriptional antiterminator, at 541,751 to 542,479
_02715
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.071 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.089 kb on + strand at 539.104 kb on - strand at 539.167 kb on - strand at 539.178 kb on - strand at 539.183 kb on - strand at 539.252 kb on + strand, within CSW01_02705 at 539.254 kb on + strand, within CSW01_02705 at 539.270 kb on - strand, within CSW01_02705 at 539.278 kb on + strand, within CSW01_02705 at 539.335 kb on + strand, within CSW01_02705 at 539.343 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.370 kb on + strand, within CSW01_02705 at 539.392 kb on - strand, within CSW01_02705 at 539.414 kb on + strand, within CSW01_02705 at 539.430 kb on + strand, within CSW01_02705 at 539.438 kb on - strand, within CSW01_02705 at 539.458 kb on - strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.468 kb on - strand, within CSW01_02705 at 539.474 kb on - strand, within CSW01_02705 at 539.504 kb on + strand, within CSW01_02705 at 539.553 kb on + strand at 539.553 kb on + strand at 539.567 kb on - strand at 539.592 kb on - strand at 539.632 kb on + strand at 539.643 kb on + strand at 539.643 kb on + strand at 539.643 kb on + strand at 539.675 kb on + strand at 539.680 kb on + strand at 539.768 kb on + strand at 539.769 kb on + strand at 539.791 kb on - strand at 539.791 kb on - strand at 539.811 kb on + strand at 539.811 kb on + strand at 539.814 kb on + strand at 539.819 kb on - strand at 539.821 kb on + strand at 539.834 kb on + strand at 539.844 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.007 kb on + strand at 540.011 kb on - strand at 540.011 kb on - strand at 540.011 kb on - strand at 540.015 kb on - strand at 540.015 kb on - strand at 540.046 kb on + strand at 540.073 kb on - strand at 540.094 kb on + strand at 540.127 kb on - strand at 540.162 kb on - strand at 540.204 kb on + strand at 540.210 kb on + strand at 540.211 kb on - strand at 540.217 kb on + strand, within CSW01_02710 at 540.218 kb on - strand, within CSW01_02710 at 540.218 kb on - strand, within CSW01_02710 at 540.220 kb on - strand, within CSW01_02710 at 540.228 kb on - strand, within CSW01_02710 at 540.247 kb on + strand, within CSW01_02710 at 540.247 kb on + strand, within CSW01_02710 at 540.250 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.345 kb on + strand, within CSW01_02710 at 540.353 kb on - strand, within CSW01_02710 at 540.353 kb on - strand, within CSW01_02710 at 540.364 kb on + strand, within CSW01_02710 at 540.375 kb on - strand, within CSW01_02710 at 540.399 kb on + strand, within CSW01_02710 at 540.399 kb on + strand, within CSW01_02710 at 540.409 kb on + strand, within CSW01_02710 at 540.413 kb on + strand, within CSW01_02710 at 540.414 kb on + strand, within CSW01_02710 at 540.419 kb on + strand, within CSW01_02710 at 540.422 kb on - strand, within CSW01_02710 at 540.431 kb on + strand, within CSW01_02710 at 540.432 kb on - strand, within CSW01_02710 at 540.540 kb on - strand, within CSW01_02710 at 540.544 kb on - strand, within CSW01_02710 at 540.544 kb on - strand, within CSW01_02710 at 540.545 kb on - strand, within CSW01_02710 at 540.565 kb on - strand, within CSW01_02710 at 540.586 kb on + strand, within CSW01_02710 at 540.626 kb on + strand, within CSW01_02710 at 540.713 kb on + strand, within CSW01_02710 at 540.713 kb on + strand, within CSW01_02710 at 540.713 kb on + strand, within CSW01_02710 at 540.721 kb on - strand, within CSW01_02710 at 540.721 kb on - strand, within CSW01_02710 at 540.721 kb on - strand, within CSW01_02710 at 540.781 kb on + strand, within CSW01_02710 at 540.789 kb on - strand, within CSW01_02710 at 540.789 kb on - strand, within CSW01_02710 at 540.796 kb on + strand, within CSW01_02710 at 540.796 kb on + strand, within CSW01_02710 at 540.796 kb on + strand, within CSW01_02710 at 540.796 kb on + strand, within CSW01_02710 at 540.804 kb on - strand, within CSW01_02710 at 540.804 kb on - strand, within CSW01_02710 at 540.877 kb on + strand, within CSW01_02710 at 540.877 kb on + strand, within CSW01_02710 at 540.877 kb on + strand, within CSW01_02710 at 540.885 kb on - strand, within CSW01_02710 at 540.885 kb on - strand, within CSW01_02710 at 540.885 kb on - strand, within CSW01_02710 at 540.897 kb on + strand, within CSW01_02710 at 540.897 kb on + strand, within CSW01_02710 at 540.905 kb on - strand, within CSW01_02710 at 540.905 kb on - strand, within CSW01_02710 at 540.952 kb on - strand, within CSW01_02710 at 541.003 kb on - strand, within CSW01_02710 at 541.092 kb on - strand, within CSW01_02710 at 541.101 kb on + strand, within CSW01_02710 at 541.123 kb on - strand, within CSW01_02710 at 541.191 kb on + strand, within CSW01_02710 at 541.205 kb on + strand, within CSW01_02710 at 541.205 kb on + strand, within CSW01_02710 at 541.219 kb on + strand, within CSW01_02710 at 541.219 kb on + strand, within CSW01_02710 at 541.281 kb on - strand, within CSW01_02710 at 541.310 kb on + strand, within CSW01_02710 at 541.356 kb on - strand, within CSW01_02710 at 541.371 kb on + strand, within CSW01_02710 at 541.376 kb on + strand, within CSW01_02710 at 541.379 kb on - strand, within CSW01_02710 at 541.414 kb on + strand, within CSW01_02710 at 541.421 kb on - strand, within CSW01_02710 at 541.427 kb on - strand, within CSW01_02710 at 541.427 kb on - strand, within CSW01_02710 at 541.427 kb on - strand, within CSW01_02710 at 541.451 kb on - strand, within CSW01_02710 at 541.479 kb on + strand, within CSW01_02710 at 541.527 kb on - strand at 541.591 kb on + strand at 541.598 kb on + strand at 541.598 kb on + strand at 541.598 kb on + strand at 541.599 kb on - strand at 541.676 kb on + strand at 541.676 kb on + strand at 541.676 kb on + strand at 541.684 kb on - strand at 541.684 kb on - strand at 541.731 kb on + strand at 541.751 kb on + strand at 541.751 kb on + strand at 541.753 kb on + strand at 541.759 kb on - strand at 541.770 kb on + strand at 541.797 kb on + strand at 541.818 kb on - strand at 541.962 kb on + strand, within CSW01_02715 at 541.980 kb on - strand, within CSW01_02715 at 542.047 kb on + strand, within CSW01_02715 at 542.052 kb on + strand, within CSW01_02715 at 542.060 kb on + strand, within CSW01_02715 at 542.071 kb on + strand, within CSW01_02715 at 542.125 kb on - strand, within CSW01_02715 at 542.125 kb on - strand, within CSW01_02715 at 542.151 kb on - strand, within CSW01_02715 at 542.151 kb on - strand, within CSW01_02715 at 542.195 kb on + strand, within CSW01_02715 at 542.203 kb on + strand, within CSW01_02715 at 542.203 kb on + strand, within CSW01_02715 at 542.211 kb on - strand, within CSW01_02715 at 542.211 kb on - strand, within CSW01_02715 at 542.235 kb on + strand, within CSW01_02715 at 542.269 kb on - strand, within CSW01_02715 at 542.282 kb on + strand, within CSW01_02715 at 542.282 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.307 kb on + strand, within CSW01_02715 at 542.315 kb on - strand, within CSW01_02715 at 542.315 kb on - strand, within CSW01_02715 at 542.319 kb on + strand, within CSW01_02715 at 542.327 kb on - strand, within CSW01_02715 at 542.334 kb on - strand, within CSW01_02715 at 542.336 kb on + strand, within CSW01_02715 at 542.336 kb on + strand, within CSW01_02715 at 542.371 kb on + strand, within CSW01_02715 at 542.395 kb on + strand, within CSW01_02715 at 542.411 kb on + strand at 542.411 kb on + strand at 542.412 kb on + strand at 542.412 kb on + strand at 542.425 kb on - strand at 542.432 kb on + strand at 542.450 kb on + strand at 542.457 kb on + strand at 542.457 kb on - strand at 542.472 kb on + strand at 542.480 kb on - strand at 542.513 kb on + strand at 542.513 kb on + strand at 542.521 kb on + strand at 542.536 kb on - strand at 542.579 kb on + strand at 542.580 kb on + strand at 542.580 kb on + strand at 542.581 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.588 kb on - strand at 542.588 kb on - strand at 542.588 kb on - strand at 542.593 kb on - strand at 542.617 kb on + strand at 542.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 539,067 + +0.3 539,067 + +0.1 539,067 + +0.5 539,067 + -0.9 539,067 + +0.6 539,067 + +1.0 539,067 + -1.0 539,067 + -1.5 539,067 + +0.8 539,067 + +0.1 539,071 - +0.2 539,075 - +0.6 539,075 - +0.1 539,075 - +0.4 539,075 - -0.3 539,075 - +0.6 539,089 + -0.5 539,104 - +1.0 539,167 - +0.0 539,178 - +0.0 539,183 - -0.0 539,252 + CSW01_02705 0.25 -0.0 539,254 + CSW01_02705 0.25 +0.3 539,270 - CSW01_02705 0.29 +0.7 539,278 + CSW01_02705 0.31 +0.2 539,335 + CSW01_02705 0.45 +0.2 539,343 - CSW01_02705 0.47 -0.1 539,364 - CSW01_02705 0.52 +0.5 539,364 - CSW01_02705 0.52 +0.3 539,364 - CSW01_02705 0.52 -0.0 539,364 - CSW01_02705 0.52 +0.3 539,370 + CSW01_02705 0.54 +1.2 539,392 - CSW01_02705 0.59 +0.5 539,414 + CSW01_02705 0.64 +0.5 539,430 + CSW01_02705 0.68 +0.5 539,438 - CSW01_02705 0.70 +0.3 539,458 - CSW01_02705 0.75 -0.5 539,460 + CSW01_02705 0.75 -0.2 539,460 + CSW01_02705 0.75 +0.6 539,460 + CSW01_02705 0.75 +1.0 539,468 - CSW01_02705 0.77 +0.3 539,474 - CSW01_02705 0.79 -0.2 539,504 + CSW01_02705 0.86 +0.1 539,553 + +0.3 539,553 + -0.3 539,567 - +1.4 539,592 - +0.7 539,632 + +1.7 539,643 + +0.7 539,643 + -0.1 539,643 + +1.2 539,675 + +1.3 539,680 + +0.3 539,768 + +0.2 539,769 + +0.0 539,791 - +0.3 539,791 - +0.4 539,811 + +0.0 539,811 + +0.1 539,814 + +0.3 539,819 - +0.3 539,821 + -1.2 539,834 + +1.0 539,844 + +0.3 540,003 + +0.5 540,003 + -0.0 540,003 + +0.1 540,003 + +0.7 540,003 + +0.3 540,003 + +0.6 540,007 + +0.4 540,011 - -0.4 540,011 - -0.8 540,011 - +0.1 540,015 - +0.8 540,015 - +1.0 540,046 + +0.5 540,073 - -0.2 540,094 + +0.0 540,127 - -1.2 540,162 - +0.1 540,204 + +0.3 540,210 + +0.9 540,211 - -0.7 540,217 + CSW01_02710 0.10 -0.0 540,218 - CSW01_02710 0.10 +0.2 540,218 - CSW01_02710 0.10 +0.1 540,220 - CSW01_02710 0.10 -0.3 540,228 - CSW01_02710 0.11 -0.7 540,247 + CSW01_02710 0.12 -0.1 540,247 + CSW01_02710 0.12 +0.5 540,250 - CSW01_02710 0.12 +0.7 540,255 - CSW01_02710 0.12 -0.0 540,255 - CSW01_02710 0.12 +0.2 540,255 - CSW01_02710 0.12 -0.8 540,255 - CSW01_02710 0.12 +0.5 540,345 + CSW01_02710 0.18 -0.3 540,353 - CSW01_02710 0.19 +0.4 540,353 - CSW01_02710 0.19 -0.1 540,364 + CSW01_02710 0.19 +0.1 540,375 - CSW01_02710 0.20 +1.3 540,399 + CSW01_02710 0.21 +0.0 540,399 + CSW01_02710 0.21 +0.8 540,409 + CSW01_02710 0.22 -0.8 540,413 + CSW01_02710 0.22 -0.1 540,414 + CSW01_02710 0.22 +0.1 540,419 + CSW01_02710 0.23 +0.6 540,422 - CSW01_02710 0.23 -0.8 540,431 + CSW01_02710 0.23 +0.2 540,432 - CSW01_02710 0.24 +0.8 540,540 - CSW01_02710 0.30 -0.2 540,544 - CSW01_02710 0.31 +0.6 540,544 - CSW01_02710 0.31 +0.4 540,545 - CSW01_02710 0.31 -0.3 540,565 - CSW01_02710 0.32 +0.8 540,586 + CSW01_02710 0.33 +0.7 540,626 + CSW01_02710 0.36 +0.2 540,713 + CSW01_02710 0.41 -0.5 540,713 + CSW01_02710 0.41 +0.4 540,713 + CSW01_02710 0.41 -0.7 540,721 - CSW01_02710 0.42 +0.1 540,721 - CSW01_02710 0.42 +2.1 540,721 - CSW01_02710 0.42 -0.2 540,781 + CSW01_02710 0.45 +0.5 540,789 - CSW01_02710 0.46 +0.3 540,789 - CSW01_02710 0.46 +0.4 540,796 + CSW01_02710 0.46 -0.3 540,796 + CSW01_02710 0.46 -0.5 540,796 + CSW01_02710 0.46 -0.1 540,796 + CSW01_02710 0.46 +0.8 540,804 - CSW01_02710 0.47 +0.3 540,804 - CSW01_02710 0.47 +0.6 540,877 + CSW01_02710 0.52 +0.4 540,877 + CSW01_02710 0.52 -0.9 540,877 + CSW01_02710 0.52 -0.2 540,885 - CSW01_02710 0.52 -0.1 540,885 - CSW01_02710 0.52 -0.6 540,885 - CSW01_02710 0.52 +0.1 540,897 + CSW01_02710 0.53 +0.1 540,897 + CSW01_02710 0.53 -0.3 540,905 - CSW01_02710 0.53 +0.4 540,905 - CSW01_02710 0.53 +0.7 540,952 - CSW01_02710 0.56 +0.6 541,003 - CSW01_02710 0.59 -0.5 541,092 - CSW01_02710 0.65 +0.3 541,101 + CSW01_02710 0.66 +0.3 541,123 - CSW01_02710 0.67 -0.1 541,191 + CSW01_02710 0.71 +0.4 541,205 + CSW01_02710 0.72 -0.2 541,205 + CSW01_02710 0.72 +1.3 541,219 + CSW01_02710 0.73 -0.4 541,219 + CSW01_02710 0.73 -0.4 541,281 - CSW01_02710 0.77 +0.3 541,310 + CSW01_02710 0.79 +0.0 541,356 - CSW01_02710 0.82 +1.8 541,371 + CSW01_02710 0.83 -0.1 541,376 + CSW01_02710 0.83 -0.7 541,379 - CSW01_02710 0.83 -0.6 541,414 + CSW01_02710 0.85 +0.4 541,421 - CSW01_02710 0.86 -0.2 541,427 - CSW01_02710 0.86 +0.9 541,427 - CSW01_02710 0.86 -0.3 541,427 - CSW01_02710 0.86 +1.3 541,451 - CSW01_02710 0.88 -0.2 541,479 + CSW01_02710 0.89 +0.3 541,527 - +0.1 541,591 + +0.1 541,598 + +0.1 541,598 + -0.3 541,598 + -1.5 541,599 - -0.5 541,676 + +0.5 541,676 + +0.1 541,676 + -1.1 541,684 - +0.5 541,684 - +1.8 541,731 + -0.2 541,751 + -0.6 541,751 + +0.8 541,753 + +0.1 541,759 - +0.5 541,770 + -0.0 541,797 + +0.2 541,818 - -1.8 541,962 + CSW01_02715 0.29 +0.8 541,980 - CSW01_02715 0.31 +0.8 542,047 + CSW01_02715 0.41 +0.6 542,052 + CSW01_02715 0.41 -0.1 542,060 + CSW01_02715 0.42 +0.1 542,071 + CSW01_02715 0.44 +0.3 542,125 - CSW01_02715 0.51 -0.2 542,125 - CSW01_02715 0.51 +0.1 542,151 - CSW01_02715 0.55 -0.2 542,151 - CSW01_02715 0.55 -0.5 542,195 + CSW01_02715 0.61 +0.2 542,203 + CSW01_02715 0.62 -0.5 542,203 + CSW01_02715 0.62 +0.7 542,211 - CSW01_02715 0.63 -0.1 542,211 - CSW01_02715 0.63 +1.1 542,235 + CSW01_02715 0.66 +0.9 542,269 - CSW01_02715 0.71 +0.9 542,282 + CSW01_02715 0.73 +0.0 542,282 + CSW01_02715 0.73 -0.1 542,292 + CSW01_02715 0.74 -0.2 542,292 + CSW01_02715 0.74 +0.6 542,292 + CSW01_02715 0.74 +0.6 542,292 + CSW01_02715 0.74 -0.4 542,300 - CSW01_02715 0.75 +0.8 542,300 - CSW01_02715 0.75 -0.1 542,300 - CSW01_02715 0.75 +0.4 542,307 + CSW01_02715 0.76 +0.2 542,315 - CSW01_02715 0.77 +1.9 542,315 - CSW01_02715 0.77 +0.7 542,319 + CSW01_02715 0.78 +0.9 542,327 - CSW01_02715 0.79 +0.6 542,334 - CSW01_02715 0.80 -0.4 542,336 + CSW01_02715 0.80 +1.3 542,336 + CSW01_02715 0.80 +1.0 542,371 + CSW01_02715 0.85 +0.1 542,395 + CSW01_02715 0.88 +0.2 542,411 + -0.5 542,411 + -0.8 542,412 + +0.1 542,412 + -0.8 542,425 - +1.4 542,432 + +0.8 542,450 + -0.1 542,457 + +0.3 542,457 - +0.0 542,472 + -0.4 542,480 - +0.1 542,513 + +0.6 542,513 + +0.3 542,521 + +0.4 542,536 - -0.5 542,579 + +0.7 542,580 + +0.8 542,580 + +0.9 542,581 + +0.2 542,585 + -0.2 542,585 + -0.1 542,585 + +1.2 542,585 + +0.9 542,588 - -0.5 542,588 - +0.3 542,588 - +0.7 542,593 - -0.0 542,617 + +0.1 542,632 + -0.0
Or see this region's nucleotide sequence