Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02590

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02585 and CSW01_02590 are separated by 60 nucleotidesCSW01_02590 and CSW01_02595 are separated by 256 nucleotides CSW01_02585: CSW01_02585 - glutamine--fructose-6-phosphate aminotransferase, at 516,145 to 517,977 _02585 CSW01_02590: CSW01_02590 - ABC transporter substrate-binding protein, at 518,038 to 519,117 _02590 CSW01_02595: CSW01_02595 - hemolysin, at 519,374 to 521,134 _02595 Position (kb) 518 519 520Strain fitness (log2 ratio) -1 0 1 2at 518.014 kb on - strandat 518.072 kb on - strandat 518.074 kb on - strandat 518.227 kb on - strand, within CSW01_02590at 518.248 kb on - strand, within CSW01_02590at 518.252 kb on + strand, within CSW01_02590at 518.260 kb on - strand, within CSW01_02590at 518.449 kb on - strand, within CSW01_02590at 518.451 kb on + strand, within CSW01_02590at 518.451 kb on + strand, within CSW01_02590at 518.460 kb on - strand, within CSW01_02590at 518.460 kb on - strand, within CSW01_02590at 518.471 kb on - strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.538 kb on - strand, within CSW01_02590at 518.560 kb on + strand, within CSW01_02590at 518.589 kb on + strand, within CSW01_02590at 518.674 kb on + strand, within CSW01_02590at 518.681 kb on + strand, within CSW01_02590at 518.683 kb on + strand, within CSW01_02590at 518.688 kb on - strand, within CSW01_02590at 518.693 kb on + strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.751 kb on - strand, within CSW01_02590at 518.751 kb on - strand, within CSW01_02590at 518.756 kb on - strand, within CSW01_02590at 518.756 kb on - strand, within CSW01_02590at 518.780 kb on - strand, within CSW01_02590at 518.822 kb on + strand, within CSW01_02590at 518.830 kb on - strand, within CSW01_02590at 518.860 kb on - strand, within CSW01_02590at 518.875 kb on + strand, within CSW01_02590at 518.880 kb on - strand, within CSW01_02590at 518.904 kb on - strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590at 518.984 kb on - strand, within CSW01_02590at 518.984 kb on - strand, within CSW01_02590at 518.984 kb on - strand, within CSW01_02590at 518.984 kb on - strand, within CSW01_02590at 518.999 kb on - strand, within CSW01_02590at 519.032 kb on + strandat 519.040 kb on - strandat 519.049 kb on + strandat 519.049 kb on + strandat 519.057 kb on - strandat 519.061 kb on + strandat 519.066 kb on + strandat 519.066 kb on + strandat 519.073 kb on + strandat 519.074 kb on - strandat 519.074 kb on - strandat 519.142 kb on + strandat 519.160 kb on - strandat 519.338 kb on - strandat 519.358 kb on + strandat 519.371 kb on + strandat 519.379 kb on - strandat 519.400 kb on + strandat 519.417 kb on + strandat 519.422 kb on + strandat 519.439 kb on + strandat 519.517 kb on + strandat 519.525 kb on - strandat 519.544 kb on + strandat 519.616 kb on - strand, within CSW01_02595at 519.653 kb on + strand, within CSW01_02595at 519.680 kb on + strand, within CSW01_02595at 519.773 kb on - strand, within CSW01_02595at 519.803 kb on + strand, within CSW01_02595at 519.895 kb on - strand, within CSW01_02595at 519.938 kb on + strand, within CSW01_02595at 519.946 kb on - strand, within CSW01_02595at 520.008 kb on - strand, within CSW01_02595at 520.020 kb on - strand, within CSW01_02595at 520.029 kb on - strand, within CSW01_02595at 520.030 kb on - strand, within CSW01_02595

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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518,014 - -0.2
518,072 - +2.1
518,074 - -0.1
518,227 - CSW01_02590 0.17 +0.3
518,248 - CSW01_02590 0.19 +1.2
518,252 + CSW01_02590 0.20 -0.8
518,260 - CSW01_02590 0.21 +0.4
518,449 - CSW01_02590 0.38 -0.3
518,451 + CSW01_02590 0.38 -0.5
518,451 + CSW01_02590 0.38 +0.4
518,460 - CSW01_02590 0.39 -0.1
518,460 - CSW01_02590 0.39 +0.2
518,471 - CSW01_02590 0.40 -0.1
518,507 + CSW01_02590 0.43 +2.5
518,507 + CSW01_02590 0.43 +0.3
518,507 + CSW01_02590 0.43 +0.1
518,507 + CSW01_02590 0.43 -0.2
518,507 + CSW01_02590 0.43 +1.2
518,507 + CSW01_02590 0.43 -0.0
518,507 + CSW01_02590 0.43 +0.6
518,507 + CSW01_02590 0.43 +0.0
518,507 + CSW01_02590 0.43 +0.7
518,507 + CSW01_02590 0.43 -0.4
518,507 + CSW01_02590 0.43 +1.0
518,507 + CSW01_02590 0.43 -0.5
518,507 + CSW01_02590 0.43 -0.3
518,507 + CSW01_02590 0.43 -0.2
518,507 + CSW01_02590 0.43 +0.0
518,507 + CSW01_02590 0.43 -0.4
518,507 + CSW01_02590 0.43 +0.1
518,515 - CSW01_02590 0.44 +0.4
518,515 - CSW01_02590 0.44 +0.6
518,515 - CSW01_02590 0.44 +0.3
518,515 - CSW01_02590 0.44 -0.2
518,515 - CSW01_02590 0.44 +0.0
518,515 - CSW01_02590 0.44 +0.2
518,515 - CSW01_02590 0.44 +1.4
518,515 - CSW01_02590 0.44 -0.4
518,515 - CSW01_02590 0.44 +0.2
518,515 - CSW01_02590 0.44 +0.5
518,515 - CSW01_02590 0.44 -0.2
518,515 - CSW01_02590 0.44 +1.7
518,515 - CSW01_02590 0.44 +0.1
518,515 - CSW01_02590 0.44 +0.5
518,515 - CSW01_02590 0.44 +0.3
518,515 - CSW01_02590 0.44 -0.8
518,538 - CSW01_02590 0.46 -0.7
518,560 + CSW01_02590 0.48 -0.0
518,589 + CSW01_02590 0.51 +0.6
518,674 + CSW01_02590 0.59 +1.0
518,681 + CSW01_02590 0.60 +0.4
518,683 + CSW01_02590 0.60 +0.4
518,688 - CSW01_02590 0.60 -0.5
518,693 + CSW01_02590 0.61 +0.2
518,701 - CSW01_02590 0.61 +0.7
518,701 - CSW01_02590 0.61 -0.1
518,701 - CSW01_02590 0.61 +1.2
518,701 - CSW01_02590 0.61 +0.2
518,701 - CSW01_02590 0.61 -0.7
518,751 - CSW01_02590 0.66 +0.1
518,751 - CSW01_02590 0.66 +0.2
518,756 - CSW01_02590 0.66 +0.0
518,756 - CSW01_02590 0.66 -0.5
518,780 - CSW01_02590 0.69 -0.0
518,822 + CSW01_02590 0.73 -0.0
518,830 - CSW01_02590 0.73 +0.4
518,860 - CSW01_02590 0.76 +0.2
518,875 + CSW01_02590 0.78 -0.2
518,880 - CSW01_02590 0.78 +0.6
518,904 - CSW01_02590 0.80 -0.1
518,976 + CSW01_02590 0.87 +0.2
518,976 + CSW01_02590 0.87 -0.2
518,976 + CSW01_02590 0.87 +2.3
518,984 - CSW01_02590 0.88 +0.0
518,984 - CSW01_02590 0.88 +0.7
518,984 - CSW01_02590 0.88 -0.2
518,984 - CSW01_02590 0.88 +0.5
518,999 - CSW01_02590 0.89 +0.2
519,032 + +0.5
519,040 - -1.2
519,049 + +0.4
519,049 + +0.4
519,057 - +0.5
519,061 + +0.6
519,066 + +0.0
519,066 + +0.3
519,073 + -0.5
519,074 - +0.7
519,074 - +1.2
519,142 + +1.0
519,160 - +0.3
519,338 - -0.0
519,358 + +0.7
519,371 + -0.5
519,379 - -0.3
519,400 + +1.6
519,417 + +0.2
519,422 + +0.3
519,439 + +0.4
519,517 + -0.0
519,525 - +1.3
519,544 + +0.1
519,616 - CSW01_02595 0.14 +0.5
519,653 + CSW01_02595 0.16 +1.0
519,680 + CSW01_02595 0.17 +0.7
519,773 - CSW01_02595 0.23 -0.4
519,803 + CSW01_02595 0.24 +0.1
519,895 - CSW01_02595 0.30 +0.0
519,938 + CSW01_02595 0.32 -1.0
519,946 - CSW01_02595 0.32 +0.4
520,008 - CSW01_02595 0.36 +1.0
520,020 - CSW01_02595 0.37 -0.1
520,029 - CSW01_02595 0.37 +0.3
520,030 - CSW01_02595 0.37 +0.2

Or see this region's nucleotide sequence