Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02565

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02560 and CSW01_02565 are separated by 79 nucleotidesCSW01_02565 and CSW01_02570 are separated by 332 nucleotidesCSW01_02570 and CSW01_02575 are separated by 71 nucleotides CSW01_02560: CSW01_02560 - chromosome initiation inhibitor, at 511,244 to 512,140 _02560 CSW01_02565: CSW01_02565 - oxidative stress defense protein, at 512,220 to 512,936 _02565 CSW01_02570: CSW01_02570 - hypothetical protein, at 513,269 to 513,400 _02570 CSW01_02575: CSW01_02575 - pyruvate kinase PykF, at 513,472 to 514,884 _02575 Position (kb) 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 511.274 kb on + strandat 511.282 kb on - strandat 511.364 kb on - strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.399 kb on - strand, within CSW01_02560at 511.401 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.604 kb on + strand, within CSW01_02560at 511.621 kb on + strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.664 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.736 kb on + strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.833 kb on - strand, within CSW01_02560at 511.875 kb on + strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.935 kb on + strand, within CSW01_02560at 511.943 kb on - strand, within CSW01_02560at 511.954 kb on + strand, within CSW01_02560at 511.968 kb on - strand, within CSW01_02560at 512.001 kb on + strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.069 kb on + strandat 512.112 kb on - strandat 512.148 kb on + strandat 512.156 kb on - strandat 512.156 kb on - strandat 512.156 kb on - strandat 512.191 kb on - strandat 512.209 kb on - strandat 512.224 kb on - strandat 512.224 kb on - strandat 512.363 kb on - strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.525 kb on + strand, within CSW01_02565at 512.548 kb on - strand, within CSW01_02565at 512.590 kb on + strand, within CSW01_02565at 512.654 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.755 kb on - strand, within CSW01_02565at 512.761 kb on - strand, within CSW01_02565at 512.812 kb on + strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.872 kb on + strandat 512.932 kb on - strandat 512.964 kb on - strandat 513.237 kb on + strandat 513.286 kb on + strand, within CSW01_02570at 513.313 kb on + strand, within CSW01_02570at 513.321 kb on + strand, within CSW01_02570at 513.322 kb on - strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.369 kb on + strand, within CSW01_02570at 513.372 kb on - strand, within CSW01_02570at 513.447 kb on + strandat 513.447 kb on + strandat 513.532 kb on - strandat 513.707 kb on + strand, within CSW01_02575at 513.803 kb on - strand, within CSW01_02575

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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511,274 + -1.5
511,282 - +0.5
511,364 - CSW01_02560 0.13 +0.3
511,391 + CSW01_02560 0.16 -0.7
511,391 + CSW01_02560 0.16 +0.4
511,391 + CSW01_02560 0.16 -0.1
511,391 + CSW01_02560 0.16 +0.3
511,391 + CSW01_02560 0.16 -0.1
511,399 - CSW01_02560 0.17 +0.1
511,401 - CSW01_02560 0.18 +1.0
511,424 - CSW01_02560 0.20 +0.5
511,424 - CSW01_02560 0.20 +0.1
511,579 + CSW01_02560 0.37 -0.2
511,579 + CSW01_02560 0.37 +0.7
511,579 + CSW01_02560 0.37 +1.1
511,582 - CSW01_02560 0.38 +0.6
511,582 - CSW01_02560 0.38 -0.7
511,582 - CSW01_02560 0.38 +0.1
511,587 - CSW01_02560 0.38 +0.7
511,587 - CSW01_02560 0.38 -0.0
511,587 - CSW01_02560 0.38 +0.4
511,587 - CSW01_02560 0.38 +0.4
511,587 - CSW01_02560 0.38 -0.8
511,587 - CSW01_02560 0.38 +0.1
511,604 + CSW01_02560 0.40 -0.8
511,621 + CSW01_02560 0.42 +1.0
511,629 - CSW01_02560 0.43 +0.0
511,629 - CSW01_02560 0.43 +0.3
511,664 + CSW01_02560 0.47 -0.2
511,708 + CSW01_02560 0.52 -0.0
511,708 + CSW01_02560 0.52 +0.2
511,708 + CSW01_02560 0.52 +0.4
511,708 + CSW01_02560 0.52 +1.1
511,716 - CSW01_02560 0.53 +2.0
511,716 - CSW01_02560 0.53 +0.2
511,736 + CSW01_02560 0.55 +1.3
511,796 - CSW01_02560 0.62 +0.6
511,796 - CSW01_02560 0.62 -1.1
511,833 - CSW01_02560 0.66 +0.4
511,875 + CSW01_02560 0.70 +0.8
511,903 - CSW01_02560 0.73 +0.0
511,903 - CSW01_02560 0.73 +0.1
511,935 + CSW01_02560 0.77 +1.2
511,943 - CSW01_02560 0.78 +0.3
511,954 + CSW01_02560 0.79 +0.8
511,968 - CSW01_02560 0.81 +0.6
512,001 + CSW01_02560 0.84 +0.5
512,009 - CSW01_02560 0.85 -0.4
512,009 - CSW01_02560 0.85 -0.3
512,069 + -0.2
512,112 - -0.8
512,148 + +1.8
512,156 - +1.2
512,156 - +0.1
512,156 - -0.3
512,191 - +0.3
512,209 - +0.2
512,224 - -0.9
512,224 - +0.3
512,363 - CSW01_02565 0.20 +2.0
512,429 + CSW01_02565 0.29 +0.2
512,429 + CSW01_02565 0.29 -0.8
512,429 + CSW01_02565 0.29 -1.4
512,525 + CSW01_02565 0.43 +1.2
512,548 - CSW01_02565 0.46 -0.3
512,590 + CSW01_02565 0.52 +1.0
512,654 + CSW01_02565 0.61 -1.5
512,735 + CSW01_02565 0.72 +0.0
512,735 + CSW01_02565 0.72 +0.1
512,735 + CSW01_02565 0.72 +1.5
512,743 - CSW01_02565 0.73 -0.8
512,743 - CSW01_02565 0.73 +1.4
512,743 - CSW01_02565 0.73 +0.2
512,755 - CSW01_02565 0.75 +0.4
512,761 - CSW01_02565 0.75 +1.8
512,812 + CSW01_02565 0.83 -1.0
512,820 - CSW01_02565 0.84 +0.4
512,820 - CSW01_02565 0.84 +2.6
512,820 - CSW01_02565 0.84 -0.0
512,820 - CSW01_02565 0.84 +1.0
512,820 - CSW01_02565 0.84 +0.8
512,820 - CSW01_02565 0.84 +0.4
512,872 + +0.8
512,932 - -0.6
512,964 - +0.2
513,237 + -2.2
513,286 + CSW01_02570 0.13 +0.5
513,313 + CSW01_02570 0.33 +0.5
513,321 + CSW01_02570 0.39 +0.2
513,322 - CSW01_02570 0.40 -0.6
513,364 + CSW01_02570 0.72 +0.3
513,364 + CSW01_02570 0.72 +0.3
513,364 + CSW01_02570 0.72 -0.5
513,364 + CSW01_02570 0.72 +0.5
513,369 + CSW01_02570 0.76 -0.8
513,372 - CSW01_02570 0.78 -0.6
513,447 + +0.4
513,447 + +2.3
513,532 - -0.0
513,707 + CSW01_02575 0.17 -0.6
513,803 - CSW01_02575 0.23 +1.0

Or see this region's nucleotide sequence