Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02415

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02410 and CSW01_02415 are separated by 239 nucleotidesCSW01_02415 and CSW01_02420 are separated by 110 nucleotides CSW01_02410: CSW01_02410 - adenine DNA glycosylase, at 481,938 to 482,999 _02410 CSW01_02415: CSW01_02415 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 483,239 to 483,958 _02415 CSW01_02420: CSW01_02420 - glutaminase, at 484,069 to 484,989 _02420 Position (kb) 483 484Strain fitness (log2 ratio) -1 0 1 2 3at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.329 kb on - strand, within CSW01_02410at 482.352 kb on + strand, within CSW01_02410at 482.360 kb on - strand, within CSW01_02410at 482.395 kb on + strand, within CSW01_02410at 482.451 kb on - strand, within CSW01_02410at 482.474 kb on - strand, within CSW01_02410at 482.547 kb on + strand, within CSW01_02410at 482.567 kb on + strand, within CSW01_02410at 482.575 kb on - strand, within CSW01_02410at 482.580 kb on - strand, within CSW01_02410at 482.586 kb on - strand, within CSW01_02410at 482.623 kb on + strand, within CSW01_02410at 482.623 kb on + strand, within CSW01_02410at 482.628 kb on + strand, within CSW01_02410at 482.633 kb on + strand, within CSW01_02410at 482.656 kb on + strand, within CSW01_02410at 482.664 kb on - strand, within CSW01_02410at 482.676 kb on - strand, within CSW01_02410at 482.679 kb on + strand, within CSW01_02410at 482.686 kb on - strand, within CSW01_02410at 482.720 kb on - strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.731 kb on + strand, within CSW01_02410at 482.734 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.739 kb on - strand, within CSW01_02410at 482.763 kb on + strand, within CSW01_02410at 482.814 kb on + strand, within CSW01_02410at 482.824 kb on + strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.832 kb on - strand, within CSW01_02410at 482.854 kb on - strand, within CSW01_02410at 482.974 kb on + strandat 482.982 kb on - strandat 482.992 kb on - strandat 482.992 kb on - strandat 482.992 kb on - strandat 483.057 kb on - strandat 483.109 kb on - strandat 483.109 kb on - strandat 483.131 kb on + strandat 483.131 kb on + strandat 483.145 kb on - strandat 483.166 kb on + strandat 483.173 kb on + strandat 483.181 kb on - strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.267 kb on - strandat 483.281 kb on + strandat 483.281 kb on + strandat 483.325 kb on + strand, within CSW01_02415at 483.367 kb on + strand, within CSW01_02415at 483.510 kb on + strand, within CSW01_02415at 483.515 kb on + strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.526 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.699 kb on + strand, within CSW01_02415at 483.755 kb on + strand, within CSW01_02415at 483.758 kb on + strand, within CSW01_02415at 483.763 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.891 kb on + strandat 483.899 kb on - strandat 483.926 kb on + strandat 483.934 kb on - strandat 484.037 kb on + strandat 484.152 kb on - strandat 484.185 kb on + strand, within CSW01_02420at 484.192 kb on + strand, within CSW01_02420at 484.195 kb on - strand, within CSW01_02420at 484.199 kb on + strand, within CSW01_02420at 484.285 kb on - strand, within CSW01_02420at 484.302 kb on - strand, within CSW01_02420at 484.313 kb on - strand, within CSW01_02420at 484.323 kb on - strand, within CSW01_02420at 484.379 kb on - strand, within CSW01_02420at 484.421 kb on + strand, within CSW01_02420at 484.454 kb on + strand, within CSW01_02420at 484.455 kb on + strand, within CSW01_02420at 484.476 kb on + strand, within CSW01_02420at 484.502 kb on - strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.685 kb on - strand, within CSW01_02420at 484.742 kb on + strand, within CSW01_02420at 484.769 kb on - strand, within CSW01_02420at 484.807 kb on - strand, within CSW01_02420at 484.920 kb on - strandat 484.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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482,264 + CSW01_02410 0.31 -0.2
482,264 + CSW01_02410 0.31 +0.1
482,264 + CSW01_02410 0.31 +0.8
482,264 + CSW01_02410 0.31 +0.3
482,264 + CSW01_02410 0.31 -0.2
482,264 + CSW01_02410 0.31 +0.3
482,264 + CSW01_02410 0.31 -1.2
482,272 - CSW01_02410 0.31 +2.0
482,272 - CSW01_02410 0.31 +0.9
482,272 - CSW01_02410 0.31 +0.3
482,272 - CSW01_02410 0.31 +0.5
482,329 - CSW01_02410 0.37 -1.2
482,352 + CSW01_02410 0.39 +0.1
482,360 - CSW01_02410 0.40 -0.0
482,395 + CSW01_02410 0.43 +0.4
482,451 - CSW01_02410 0.48 +0.3
482,474 - CSW01_02410 0.50 +3.0
482,547 + CSW01_02410 0.57 -0.3
482,567 + CSW01_02410 0.59 -0.1
482,575 - CSW01_02410 0.60 -0.1
482,580 - CSW01_02410 0.60 +1.4
482,586 - CSW01_02410 0.61 +0.8
482,623 + CSW01_02410 0.65 +0.1
482,623 + CSW01_02410 0.65 +0.6
482,628 + CSW01_02410 0.65 -0.2
482,633 + CSW01_02410 0.65 +1.0
482,656 + CSW01_02410 0.68 +0.2
482,664 - CSW01_02410 0.68 +1.4
482,676 - CSW01_02410 0.69 +0.4
482,679 + CSW01_02410 0.70 -1.1
482,686 - CSW01_02410 0.70 +0.3
482,720 - CSW01_02410 0.74 -0.3
482,731 + CSW01_02410 0.75 +0.4
482,731 + CSW01_02410 0.75 -0.0
482,731 + CSW01_02410 0.75 +1.0
482,731 + CSW01_02410 0.75 -0.0
482,731 + CSW01_02410 0.75 -0.1
482,734 - CSW01_02410 0.75 +1.3
482,739 - CSW01_02410 0.75 -0.1
482,739 - CSW01_02410 0.75 +0.6
482,739 - CSW01_02410 0.75 +0.3
482,739 - CSW01_02410 0.75 +0.3
482,739 - CSW01_02410 0.75 +0.2
482,739 - CSW01_02410 0.75 +0.7
482,739 - CSW01_02410 0.75 -0.4
482,763 + CSW01_02410 0.78 +1.0
482,814 + CSW01_02410 0.82 +0.0
482,824 + CSW01_02410 0.83 -0.2
482,832 - CSW01_02410 0.84 +0.3
482,832 - CSW01_02410 0.84 -0.2
482,832 - CSW01_02410 0.84 -0.2
482,854 - CSW01_02410 0.86 -0.9
482,974 + +1.4
482,982 - +0.9
482,992 - -0.0
482,992 - +0.9
482,992 - -0.3
483,057 - -0.2
483,109 - -0.0
483,109 - -0.7
483,131 + +0.5
483,131 + +0.5
483,145 - -0.1
483,166 + +0.6
483,173 + +1.3
483,181 - +0.1
483,255 + +2.3
483,255 + +0.5
483,255 + +0.3
483,255 + -0.6
483,267 - +0.2
483,281 + +0.1
483,281 + +0.2
483,325 + CSW01_02415 0.12 -0.7
483,367 + CSW01_02415 0.18 -0.0
483,510 + CSW01_02415 0.38 +0.2
483,515 + CSW01_02415 0.38 -0.1
483,518 - CSW01_02415 0.39 +0.6
483,518 - CSW01_02415 0.39 +2.1
483,525 + CSW01_02415 0.40 +0.7
483,525 + CSW01_02415 0.40 -0.1
483,525 + CSW01_02415 0.40 +0.6
483,525 + CSW01_02415 0.40 +0.2
483,525 + CSW01_02415 0.40 +0.9
483,525 + CSW01_02415 0.40 +0.5
483,525 + CSW01_02415 0.40 +0.1
483,525 + CSW01_02415 0.40 -0.2
483,525 + CSW01_02415 0.40 +0.8
483,526 - CSW01_02415 0.40 +0.6
483,533 - CSW01_02415 0.41 -0.2
483,533 - CSW01_02415 0.41 +0.9
483,533 - CSW01_02415 0.41 -0.7
483,533 - CSW01_02415 0.41 +0.7
483,533 - CSW01_02415 0.41 +1.7
483,699 + CSW01_02415 0.64 +0.4
483,755 + CSW01_02415 0.72 +0.4
483,758 + CSW01_02415 0.72 +0.3
483,763 - CSW01_02415 0.73 +0.6
483,764 - CSW01_02415 0.73 -0.2
483,764 - CSW01_02415 0.73 +0.6
483,886 + CSW01_02415 0.90 -0.5
483,886 + CSW01_02415 0.90 +0.4
483,891 + -0.6
483,899 - +0.1
483,926 + +1.4
483,934 - -0.1
484,037 + -0.8
484,152 - +0.2
484,185 + CSW01_02420 0.13 +0.4
484,192 + CSW01_02420 0.13 +0.5
484,195 - CSW01_02420 0.14 +0.3
484,199 + CSW01_02420 0.14 +1.7
484,285 - CSW01_02420 0.23 -0.3
484,302 - CSW01_02420 0.25 +0.5
484,313 - CSW01_02420 0.26 +0.1
484,323 - CSW01_02420 0.28 +1.0
484,379 - CSW01_02420 0.34 -1.0
484,421 + CSW01_02420 0.38 -0.2
484,454 + CSW01_02420 0.42 +0.8
484,455 + CSW01_02420 0.42 +0.2
484,476 + CSW01_02420 0.44 +0.3
484,502 - CSW01_02420 0.47 +1.2
484,667 + CSW01_02420 0.65 -0.2
484,667 + CSW01_02420 0.65 -0.3
484,667 + CSW01_02420 0.65 -0.3
484,667 + CSW01_02420 0.65 -0.6
484,667 + CSW01_02420 0.65 +0.5
484,675 - CSW01_02420 0.66 +0.7
484,675 - CSW01_02420 0.66 +1.2
484,675 - CSW01_02420 0.66 -0.2
484,675 - CSW01_02420 0.66 -0.3
484,675 - CSW01_02420 0.66 +0.9
484,675 - CSW01_02420 0.66 -0.4
484,675 - CSW01_02420 0.66 +0.6
484,675 - CSW01_02420 0.66 -1.1
484,675 - CSW01_02420 0.66 +0.8
484,675 - CSW01_02420 0.66 -0.2
484,685 - CSW01_02420 0.67 +0.5
484,742 + CSW01_02420 0.73 +0.2
484,769 - CSW01_02420 0.76 -0.0
484,807 - CSW01_02420 0.80 +1.0
484,920 - +0.6
484,954 - +0.7

Or see this region's nucleotide sequence