Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02400

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02375 and CSW01_02380 are separated by 255 nucleotidesCSW01_02380 and CSW01_02385 are separated by 37 nucleotidesCSW01_02385 and CSW01_02390 are separated by 10 nucleotidesCSW01_02390 and CSW01_02395 are separated by 48 nucleotidesCSW01_02395 and CSW01_02400 are separated by 109 nucleotidesCSW01_02400 and CSW01_02405 are separated by 101 nucleotidesCSW01_02405 and CSW01_02410 are separated by 13 nucleotides CSW01_02375: CSW01_02375 - methyl-accepting chemotaxis protein, at 478,034 to 479,659 _02375 CSW01_02380: CSW01_02380 - tRNA-Asn, at 479,915 to 479,990 _02380 CSW01_02385: CSW01_02385 - tRNA-Phe, at 480,028 to 480,103 _02385 CSW01_02390: CSW01_02390 - tRNA-Thr, at 480,114 to 480,189 _02390 CSW01_02395: CSW01_02395 - tRNA-Phe, at 480,238 to 480,313 _02395 CSW01_02400: CSW01_02400 - lytic murein transglycosylase, at 480,423 to 481,550 _02400 CSW01_02405: CSW01_02405 - Fe(2+)-trafficking protein, at 481,652 to 481,924 _02405 CSW01_02410: CSW01_02410 - adenine DNA glycosylase, at 481,938 to 482,999 _02410 Position (kb) 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2 3at 479.429 kb on + strand, within CSW01_02375at 479.460 kb on + strand, within CSW01_02375at 479.502 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.541 kb on - strandat 479.620 kb on - strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.735 kb on - strandat 479.735 kb on - strandat 479.835 kb on + strandat 479.939 kb on - strand, within CSW01_02380at 479.966 kb on + strand, within CSW01_02380at 480.158 kb on - strand, within CSW01_02390at 480.191 kb on + strandat 480.191 kb on + strandat 480.199 kb on - strandat 480.543 kb on - strand, within CSW01_02400at 480.543 kb on - strand, within CSW01_02400at 480.568 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on - strand, within CSW01_02400at 480.587 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.634 kb on + strand, within CSW01_02400at 480.642 kb on - strand, within CSW01_02400at 480.688 kb on + strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.753 kb on + strand, within CSW01_02400at 480.763 kb on + strand, within CSW01_02400at 480.764 kb on + strand, within CSW01_02400at 480.773 kb on + strand, within CSW01_02400at 480.823 kb on + strand, within CSW01_02400at 480.842 kb on + strand, within CSW01_02400at 480.843 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.990 kb on - strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.049 kb on + strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.093 kb on + strand, within CSW01_02400at 481.121 kb on - strand, within CSW01_02400at 481.144 kb on - strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.177 kb on - strand, within CSW01_02400at 481.251 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400at 481.402 kb on - strand, within CSW01_02400at 481.402 kb on - strand, within CSW01_02400at 481.440 kb on - strandat 481.440 kb on - strandat 481.520 kb on - strandat 481.520 kb on - strandat 481.520 kb on - strandat 481.538 kb on - strandat 481.605 kb on - strandat 481.666 kb on + strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.674 kb on - strandat 481.675 kb on - strandat 481.814 kb on - strand, within CSW01_02405at 481.936 kb on - strandat 481.969 kb on + strandat 481.977 kb on - strandat 481.977 kb on - strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.018 kb on + strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.026 kb on - strandat 482.028 kb on + strandat 482.038 kb on + strandat 482.046 kb on - strand, within CSW01_02410at 482.046 kb on - strand, within CSW01_02410at 482.114 kb on + strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.122 kb on - strand, within CSW01_02410at 482.126 kb on + strand, within CSW01_02410at 482.183 kb on + strand, within CSW01_02410at 482.191 kb on - strand, within CSW01_02410at 482.191 kb on - strand, within CSW01_02410at 482.201 kb on - strand, within CSW01_02410at 482.201 kb on - strand, within CSW01_02410at 482.229 kb on + strand, within CSW01_02410at 482.237 kb on - strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.264 kb on + strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.272 kb on - strand, within CSW01_02410at 482.329 kb on - strand, within CSW01_02410at 482.352 kb on + strand, within CSW01_02410at 482.360 kb on - strand, within CSW01_02410at 482.395 kb on + strand, within CSW01_02410at 482.451 kb on - strand, within CSW01_02410at 482.474 kb on - strand, within CSW01_02410at 482.547 kb on + strand, within CSW01_02410

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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479,429 + CSW01_02375 0.86 -0.8
479,460 + CSW01_02375 0.88 +0.4
479,502 + +0.3
479,520 + -0.1
479,520 + +0.6
479,520 + +0.7
479,520 + +0.3
479,520 + +0.4
479,520 + +0.4
479,520 + -0.2
479,520 + +0.7
479,520 + +0.4
479,520 + +1.8
479,520 + +0.1
479,520 + +0.4
479,520 + +1.0
479,528 - +0.2
479,528 - +0.5
479,528 - +0.8
479,541 - +1.2
479,620 - +0.7
479,680 + +1.0
479,680 + +0.1
479,680 + +0.5
479,680 + +1.1
479,688 - +0.5
479,688 - +0.1
479,688 - +0.1
479,688 - +0.2
479,688 - -0.9
479,688 - +0.0
479,688 - +0.0
479,735 - +1.6
479,735 - +0.4
479,835 + +0.1
479,939 - CSW01_02380 0.32 -0.2
479,966 + CSW01_02380 0.67 +0.7
480,158 - CSW01_02390 0.58 +0.5
480,191 + -0.5
480,191 + +0.4
480,199 - +0.0
480,543 - CSW01_02400 0.11 -1.2
480,543 - CSW01_02400 0.11 -0.1
480,568 + CSW01_02400 0.13 +0.3
480,577 + CSW01_02400 0.14 -2.3
480,577 + CSW01_02400 0.14 +0.3
480,577 - CSW01_02400 0.14 -0.8
480,587 - CSW01_02400 0.15 +1.0
480,632 - CSW01_02400 0.19 +2.3
480,632 - CSW01_02400 0.19 -0.4
480,634 + CSW01_02400 0.19 +0.2
480,642 - CSW01_02400 0.19 +0.0
480,688 + CSW01_02400 0.23 -0.3
480,723 - CSW01_02400 0.27 -0.6
480,723 - CSW01_02400 0.27 +0.1
480,723 - CSW01_02400 0.27 -0.5
480,753 + CSW01_02400 0.29 +0.2
480,763 + CSW01_02400 0.30 -0.4
480,764 + CSW01_02400 0.30 -0.6
480,773 + CSW01_02400 0.31 -0.5
480,823 + CSW01_02400 0.35 +0.1
480,842 + CSW01_02400 0.37 -0.3
480,843 + CSW01_02400 0.37 -0.1
480,876 + CSW01_02400 0.40 +0.2
480,876 + CSW01_02400 0.40 +0.8
480,876 + CSW01_02400 0.40 -0.7
480,884 - CSW01_02400 0.41 -2.1
480,884 - CSW01_02400 0.41 +0.4
480,884 - CSW01_02400 0.41 +0.9
480,910 + CSW01_02400 0.43 +0.0
480,910 + CSW01_02400 0.43 -1.0
480,990 - CSW01_02400 0.50 +0.1
481,042 + CSW01_02400 0.55 -0.3
481,042 + CSW01_02400 0.55 -1.2
481,042 + CSW01_02400 0.55 -0.3
481,042 + CSW01_02400 0.55 +0.2
481,042 + CSW01_02400 0.55 -0.6
481,042 + CSW01_02400 0.55 +0.3
481,042 + CSW01_02400 0.55 -2.5
481,049 + CSW01_02400 0.55 +1.6
481,050 - CSW01_02400 0.56 -0.3
481,050 - CSW01_02400 0.56 -0.0
481,093 + CSW01_02400 0.59 +0.5
481,121 - CSW01_02400 0.62 +0.1
481,144 - CSW01_02400 0.64 -0.0
481,169 + CSW01_02400 0.66 +0.2
481,169 + CSW01_02400 0.66 +0.4
481,177 - CSW01_02400 0.67 -1.1
481,251 - CSW01_02400 0.73 +0.8
481,279 - CSW01_02400 0.76 +0.1
481,279 - CSW01_02400 0.76 +0.0
481,402 - CSW01_02400 0.87 -0.3
481,402 - CSW01_02400 0.87 -0.1
481,440 - +1.5
481,440 - +1.4
481,520 - -0.1
481,520 - -0.7
481,520 - +0.1
481,538 - -0.2
481,605 - +1.4
481,666 + +0.1
481,674 - +0.7
481,674 - +0.5
481,674 - +0.4
481,674 - +0.3
481,674 - +0.6
481,674 - +1.1
481,675 - -0.8
481,814 - CSW01_02405 0.59 -0.1
481,936 - +0.3
481,969 + -1.3
481,977 - +0.4
481,977 - -0.2
482,018 + +0.2
482,018 + +0.2
482,018 + -0.3
482,018 + +0.3
482,018 + +0.4
482,018 + -1.2
482,026 - -0.3
482,026 - +0.4
482,026 - +0.2
482,026 - +0.4
482,028 + +0.2
482,038 + -0.2
482,046 - CSW01_02410 0.10 -0.1
482,046 - CSW01_02410 0.10 +0.2
482,114 + CSW01_02410 0.17 +0.7
482,122 - CSW01_02410 0.17 -0.0
482,122 - CSW01_02410 0.17 -1.0
482,122 - CSW01_02410 0.17 -0.4
482,122 - CSW01_02410 0.17 -0.5
482,122 - CSW01_02410 0.17 +0.1
482,122 - CSW01_02410 0.17 +1.1
482,122 - CSW01_02410 0.17 -0.0
482,122 - CSW01_02410 0.17 -0.2
482,126 + CSW01_02410 0.18 -0.8
482,183 + CSW01_02410 0.23 +1.8
482,191 - CSW01_02410 0.24 -0.7
482,191 - CSW01_02410 0.24 +0.9
482,201 - CSW01_02410 0.25 -0.3
482,201 - CSW01_02410 0.25 +0.2
482,229 + CSW01_02410 0.27 -0.3
482,237 - CSW01_02410 0.28 +0.3
482,264 + CSW01_02410 0.31 -0.2
482,264 + CSW01_02410 0.31 +0.1
482,264 + CSW01_02410 0.31 +0.8
482,264 + CSW01_02410 0.31 +0.3
482,264 + CSW01_02410 0.31 -0.2
482,264 + CSW01_02410 0.31 +0.3
482,264 + CSW01_02410 0.31 -1.2
482,272 - CSW01_02410 0.31 +2.0
482,272 - CSW01_02410 0.31 +0.9
482,272 - CSW01_02410 0.31 +0.3
482,272 - CSW01_02410 0.31 +0.5
482,329 - CSW01_02410 0.37 -1.2
482,352 + CSW01_02410 0.39 +0.1
482,360 - CSW01_02410 0.40 -0.0
482,395 + CSW01_02410 0.43 +0.4
482,451 - CSW01_02410 0.48 +0.3
482,474 - CSW01_02410 0.50 +3.0
482,547 + CSW01_02410 0.57 -0.3

Or see this region's nucleotide sequence