Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02010

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01995 and CSW01_02000 overlap by 47 nucleotidesCSW01_02000 and CSW01_02005 overlap by 43 nucleotidesCSW01_02005 and CSW01_02010 are separated by 85 nucleotidesCSW01_02010 and CSW01_02015 overlap by 1 nucleotides CSW01_01995: CSW01_01995 - iron-hydroxamate ABC transporter substrate-binding protein, at 394,515 to 395,180 _01995 CSW01_02000: CSW01_02000 - Fe3+ hydroxamate ABC transporter substrate-binding protein, at 395,134 to 395,304 _02000 CSW01_02005: CSW01_02005 - hypothetical protein, at 395,262 to 395,531 _02005 CSW01_02010: CSW01_02010 - assimilatory sulfite reductase (NADPH) flavoprotein subunit, at 395,617 to 397,461 _02010 CSW01_02015: CSW01_02015 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 397,461 to 399,194 _02015 Position (kb) 395 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1at 394.676 kb on + strand, within CSW01_01995at 394.677 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.816 kb on + strand, within CSW01_01995at 394.824 kb on - strand, within CSW01_01995at 394.826 kb on + strand, within CSW01_01995at 394.834 kb on + strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995at 395.083 kb on + strand, within CSW01_01995at 395.100 kb on - strand, within CSW01_01995at 395.109 kb on - strand, within CSW01_01995at 395.119 kb on - strandat 395.161 kb on - strandat 395.317 kb on + strand, within CSW01_02005at 395.332 kb on + strand, within CSW01_02005at 395.340 kb on - strand, within CSW01_02005at 395.361 kb on - strand, within CSW01_02005at 395.364 kb on - strand, within CSW01_02005at 395.368 kb on + strand, within CSW01_02005at 395.376 kb on - strand, within CSW01_02005at 395.376 kb on - strand, within CSW01_02005at 395.468 kb on + strand, within CSW01_02005at 395.652 kb on + strandat 395.652 kb on + strandat 395.711 kb on - strandat 395.811 kb on + strand, within CSW01_02010at 395.896 kb on + strand, within CSW01_02010at 395.896 kb on + strand, within CSW01_02010at 395.968 kb on + strand, within CSW01_02010at 395.968 kb on + strand, within CSW01_02010at 395.968 kb on + strand, within CSW01_02010at 396.123 kb on - strand, within CSW01_02010at 396.123 kb on - strand, within CSW01_02010at 396.262 kb on + strand, within CSW01_02010at 396.285 kb on + strand, within CSW01_02010at 396.330 kb on + strand, within CSW01_02010at 396.340 kb on + strand, within CSW01_02010at 396.340 kb on + strand, within CSW01_02010at 396.361 kb on + strand, within CSW01_02010at 396.374 kb on - strand, within CSW01_02010at 396.424 kb on + strand, within CSW01_02010at 396.424 kb on + strand, within CSW01_02010at 396.519 kb on + strand, within CSW01_02010at 396.520 kb on + strand, within CSW01_02010at 396.531 kb on + strand, within CSW01_02010at 396.547 kb on - strand, within CSW01_02010at 396.565 kb on + strand, within CSW01_02010at 396.674 kb on + strand, within CSW01_02010at 396.789 kb on + strand, within CSW01_02010at 396.789 kb on - strand, within CSW01_02010at 396.796 kb on + strand, within CSW01_02010at 396.806 kb on + strand, within CSW01_02010at 396.833 kb on + strand, within CSW01_02010at 396.894 kb on + strand, within CSW01_02010at 396.910 kb on + strand, within CSW01_02010at 396.910 kb on + strand, within CSW01_02010at 397.018 kb on - strand, within CSW01_02010at 397.034 kb on - strand, within CSW01_02010at 397.034 kb on - strand, within CSW01_02010at 397.199 kb on + strand, within CSW01_02010at 397.236 kb on + strand, within CSW01_02010at 397.297 kb on + strandat 397.362 kb on - strandat 397.402 kb on + strandat 397.423 kb on - strandat 397.432 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.455 kb on + strandat 397.463 kb on - strandat 397.463 kb on - strandat 397.463 kb on - strandat 397.485 kb on + strandat 397.506 kb on + strandat 397.527 kb on - strandat 397.619 kb on + strandat 397.626 kb on - strandat 397.696 kb on - strand, within CSW01_02015at 397.713 kb on + strand, within CSW01_02015at 397.713 kb on + strand, within CSW01_02015at 397.721 kb on - strand, within CSW01_02015at 397.731 kb on - strand, within CSW01_02015at 397.740 kb on + strand, within CSW01_02015at 397.745 kb on + strand, within CSW01_02015at 397.805 kb on - strand, within CSW01_02015at 397.807 kb on - strand, within CSW01_02015at 397.882 kb on + strand, within CSW01_02015at 397.946 kb on - strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.948 kb on + strand, within CSW01_02015at 397.949 kb on + strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 397.991 kb on - strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.218 kb on + strand, within CSW01_02015at 398.258 kb on + strand, within CSW01_02015

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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394,676 + CSW01_01995 0.24 -0.7
394,677 - CSW01_01995 0.24 -0.1
394,730 - CSW01_01995 0.32 -1.2
394,730 - CSW01_01995 0.32 +0.1
394,816 + CSW01_01995 0.45 +1.7
394,824 - CSW01_01995 0.46 -0.5
394,826 + CSW01_01995 0.47 -0.2
394,834 + CSW01_01995 0.48 -0.4
394,842 - CSW01_01995 0.49 -0.6
394,842 - CSW01_01995 0.49 -1.5
395,083 + CSW01_01995 0.85 -0.1
395,100 - CSW01_01995 0.88 -0.3
395,109 - CSW01_01995 0.89 -0.5
395,119 - +0.4
395,161 - +1.0
395,317 + CSW01_02005 0.20 -0.3
395,332 + CSW01_02005 0.26 +0.6
395,340 - CSW01_02005 0.29 +0.4
395,361 - CSW01_02005 0.37 +1.4
395,364 - CSW01_02005 0.38 +0.8
395,368 + CSW01_02005 0.39 +0.7
395,376 - CSW01_02005 0.42 +0.7
395,376 - CSW01_02005 0.42 +0.0
395,468 + CSW01_02005 0.76 +0.5
395,652 + -1.2
395,652 + -0.3
395,711 - -0.6
395,811 + CSW01_02010 0.11 -3.5
395,896 + CSW01_02010 0.15 -1.4
395,896 + CSW01_02010 0.15 -2.0
395,968 + CSW01_02010 0.19 -0.4
395,968 + CSW01_02010 0.19 -2.2
395,968 + CSW01_02010 0.19 -2.2
396,123 - CSW01_02010 0.27 -2.5
396,123 - CSW01_02010 0.27 -0.1
396,262 + CSW01_02010 0.35 -0.5
396,285 + CSW01_02010 0.36 +0.1
396,330 + CSW01_02010 0.39 -0.1
396,340 + CSW01_02010 0.39 +0.0
396,340 + CSW01_02010 0.39 -0.6
396,361 + CSW01_02010 0.40 +0.1
396,374 - CSW01_02010 0.41 -0.5
396,424 + CSW01_02010 0.44 -1.5
396,424 + CSW01_02010 0.44 -0.6
396,519 + CSW01_02010 0.49 -0.3
396,520 + CSW01_02010 0.49 -0.9
396,531 + CSW01_02010 0.50 +0.7
396,547 - CSW01_02010 0.50 -0.5
396,565 + CSW01_02010 0.51 +0.4
396,674 + CSW01_02010 0.57 -1.5
396,789 + CSW01_02010 0.64 -0.7
396,789 - CSW01_02010 0.64 +1.1
396,796 + CSW01_02010 0.64 -0.0
396,806 + CSW01_02010 0.64 +1.7
396,833 + CSW01_02010 0.66 -0.5
396,894 + CSW01_02010 0.69 -0.5
396,910 + CSW01_02010 0.70 +0.3
396,910 + CSW01_02010 0.70 +0.3
397,018 - CSW01_02010 0.76 -0.5
397,034 - CSW01_02010 0.77 +0.5
397,034 - CSW01_02010 0.77 -1.0
397,199 + CSW01_02010 0.86 +1.1
397,236 + CSW01_02010 0.88 -0.7
397,297 + +0.0
397,362 - -1.9
397,402 + +0.3
397,423 - -0.9
397,432 + -1.0
397,455 + +0.8
397,455 + -2.5
397,455 + -0.2
397,455 + +0.3
397,455 + +1.3
397,455 + -0.2
397,455 + -0.7
397,463 - -0.7
397,463 - -1.5
397,463 - -1.1
397,485 + -0.6
397,506 + +0.3
397,527 - -2.4
397,619 + -1.5
397,626 - -0.9
397,696 - CSW01_02015 0.14 -1.1
397,713 + CSW01_02015 0.15 +0.4
397,713 + CSW01_02015 0.15 -1.5
397,721 - CSW01_02015 0.15 +0.4
397,731 - CSW01_02015 0.16 +0.1
397,740 + CSW01_02015 0.16 -0.5
397,745 + CSW01_02015 0.16 -0.9
397,805 - CSW01_02015 0.20 -0.7
397,807 - CSW01_02015 0.20 -1.0
397,882 + CSW01_02015 0.24 -1.0
397,946 - CSW01_02015 0.28 -0.3
397,948 + CSW01_02015 0.28 -0.5
397,948 + CSW01_02015 0.28 -1.2
397,948 + CSW01_02015 0.28 -1.5
397,949 + CSW01_02015 0.28 -0.3
397,991 - CSW01_02015 0.31 -0.5
397,991 - CSW01_02015 0.31 -0.9
397,991 - CSW01_02015 0.31 +1.1
398,218 + CSW01_02015 0.44 -1.6
398,218 + CSW01_02015 0.44 -2.5
398,218 + CSW01_02015 0.44 -1.0
398,218 + CSW01_02015 0.44 -1.9
398,258 + CSW01_02015 0.46 -0.2

Or see this region's nucleotide sequence