Experiment: LB_Anaerobic_18HR_ZN20A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01920 and CSW01_01925 are separated by 211 nucleotides CSW01_01925 and CSW01_01930 are separated by 7 nucleotides CSW01_01930 and CSW01_01935 are separated by 15 nucleotides CSW01_01935 and CSW01_01940 are separated by 33 nucleotides CSW01_01940 and CSW01_01945 are separated by 61 nucleotides
CSW01_01920: CSW01_01920 - bacterioferritin, at 382,246 to 382,722
_01920
CSW01_01925: CSW01_01925 - 30S ribosomal protein S6, at 382,934 to 383,302
_01925
CSW01_01930: CSW01_01930 - primosomal replication protein N, at 383,310 to 383,612
_01930
CSW01_01935: CSW01_01935 - 30S ribosomal protein S18, at 383,628 to 383,855
_01935
CSW01_01940: CSW01_01940 - 50S ribosomal protein L9, at 383,889 to 384,338
_01940
CSW01_01945: CSW01_01945 - DUF481 domain-containing protein, at 384,400 to 385,209
_01945
Position (kb) 383
384 Strain fitness (log2 ratio) -1
0
1 at 382.345 kb on + strand, within CSW01_01920 at 382.396 kb on - strand, within CSW01_01920 at 382.725 kb on - strand at 382.740 kb on + strand at 383.831 kb on + strand, within CSW01_01935 at 383.929 kb on + strand at 384.199 kb on + strand, within CSW01_01940 at 384.254 kb on + strand, within CSW01_01940 at 384.445 kb on + strand at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.609 kb on - strand, within CSW01_01945
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A remove 382,345 + CSW01_01920 0.21 -0.2 382,396 - CSW01_01920 0.31 +0.3 382,725 - +1.6 382,740 + +1.7 383,831 + CSW01_01935 0.89 +1.1 383,929 + +0.1 384,199 + CSW01_01940 0.69 -0.2 384,254 + CSW01_01940 0.81 -0.3 384,445 + +0.9 384,601 + CSW01_01945 0.25 +0.8 384,601 + CSW01_01945 0.25 +0.4 384,601 + CSW01_01945 0.25 +1.0 384,601 + CSW01_01945 0.25 +0.2 384,609 - CSW01_01945 0.26 +0.4
Or see this region's nucleotide sequence