Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01735

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01730 and CSW01_01735 overlap by 4 nucleotidesCSW01_01735 and CSW01_01740 are separated by 168 nucleotides CSW01_01730: CSW01_01730 - acetyltransferase, at 351,151 to 352,110 _01730 CSW01_01735: CSW01_01735 - peptidase M23, at 352,107 to 353,255 _01735 CSW01_01740: CSW01_01740 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 353,424 to 354,956 _01740 Position (kb) 352 353 354Strain fitness (log2 ratio) -1 0 1 2at 351.415 kb on + strand, within CSW01_01730at 351.454 kb on - strand, within CSW01_01730at 351.523 kb on - strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.540 kb on - strand, within CSW01_01730at 351.546 kb on + strand, within CSW01_01730at 351.579 kb on - strand, within CSW01_01730at 351.598 kb on - strand, within CSW01_01730at 351.640 kb on - strand, within CSW01_01730at 351.652 kb on + strand, within CSW01_01730at 351.713 kb on - strand, within CSW01_01730at 351.905 kb on - strand, within CSW01_01730at 351.939 kb on + strand, within CSW01_01730at 351.939 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.959 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730at 352.120 kb on - strandat 352.157 kb on + strandat 352.164 kb on + strandat 352.172 kb on - strandat 352.172 kb on - strandat 352.199 kb on - strandat 352.220 kb on - strandat 352.251 kb on - strand, within CSW01_01735at 352.253 kb on + strand, within CSW01_01735at 352.264 kb on + strand, within CSW01_01735at 352.267 kb on - strand, within CSW01_01735at 352.282 kb on - strand, within CSW01_01735at 352.285 kb on + strand, within CSW01_01735at 352.293 kb on - strand, within CSW01_01735at 352.313 kb on + strand, within CSW01_01735at 352.313 kb on + strand, within CSW01_01735at 352.318 kb on + strand, within CSW01_01735at 352.348 kb on - strand, within CSW01_01735at 352.363 kb on + strand, within CSW01_01735at 352.363 kb on + strand, within CSW01_01735at 352.395 kb on + strand, within CSW01_01735at 352.395 kb on + strand, within CSW01_01735at 352.403 kb on - strand, within CSW01_01735at 352.403 kb on - strand, within CSW01_01735at 352.423 kb on + strand, within CSW01_01735at 352.423 kb on + strand, within CSW01_01735at 352.441 kb on - strand, within CSW01_01735at 352.455 kb on + strand, within CSW01_01735at 352.474 kb on + strand, within CSW01_01735at 352.503 kb on + strand, within CSW01_01735at 352.511 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.653 kb on - strand, within CSW01_01735at 352.665 kb on + strand, within CSW01_01735at 352.679 kb on - strand, within CSW01_01735at 352.700 kb on + strand, within CSW01_01735at 352.709 kb on + strand, within CSW01_01735at 352.717 kb on - strand, within CSW01_01735at 352.721 kb on + strand, within CSW01_01735at 352.771 kb on - strand, within CSW01_01735at 352.803 kb on + strand, within CSW01_01735at 352.811 kb on - strand, within CSW01_01735at 352.857 kb on - strand, within CSW01_01735at 352.889 kb on - strand, within CSW01_01735at 352.927 kb on - strand, within CSW01_01735at 352.948 kb on + strand, within CSW01_01735at 352.958 kb on + strand, within CSW01_01735at 353.042 kb on + strand, within CSW01_01735at 353.184 kb on + strandat 353.271 kb on - strandat 353.302 kb on + strandat 353.302 kb on + strandat 353.309 kb on + strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.402 kb on - strandat 353.409 kb on - strandat 353.422 kb on + strandat 353.422 kb on + strandat 353.422 kb on + strandat 353.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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351,415 + CSW01_01730 0.28 +0.2
351,454 - CSW01_01730 0.32 +0.8
351,523 - CSW01_01730 0.39 +0.7
351,532 + CSW01_01730 0.40 +0.2
351,532 + CSW01_01730 0.40 +0.5
351,540 - CSW01_01730 0.41 -0.2
351,546 + CSW01_01730 0.41 +1.0
351,579 - CSW01_01730 0.45 +0.3
351,598 - CSW01_01730 0.47 +0.2
351,640 - CSW01_01730 0.51 -0.8
351,652 + CSW01_01730 0.52 +0.4
351,713 - CSW01_01730 0.59 -1.1
351,905 - CSW01_01730 0.79 -0.0
351,939 + CSW01_01730 0.82 -0.4
351,939 - CSW01_01730 0.82 +0.4
351,947 - CSW01_01730 0.83 +0.9
351,947 - CSW01_01730 0.83 -0.1
351,947 - CSW01_01730 0.83 +0.0
351,947 - CSW01_01730 0.83 +0.3
351,947 - CSW01_01730 0.83 +2.5
351,947 - CSW01_01730 0.83 +0.8
351,951 + CSW01_01730 0.83 -0.0
351,951 + CSW01_01730 0.83 +0.2
351,959 - CSW01_01730 0.84 -0.0
351,972 - CSW01_01730 0.86 +0.5
351,972 - CSW01_01730 0.86 +0.9
352,120 - +1.6
352,157 + +0.8
352,164 + -0.8
352,172 - -0.1
352,172 - +0.6
352,199 - -0.4
352,220 - +0.8
352,251 - CSW01_01735 0.13 +0.6
352,253 + CSW01_01735 0.13 +0.5
352,264 + CSW01_01735 0.14 +0.5
352,267 - CSW01_01735 0.14 -0.2
352,282 - CSW01_01735 0.15 +1.6
352,285 + CSW01_01735 0.15 +0.3
352,293 - CSW01_01735 0.16 +0.4
352,313 + CSW01_01735 0.18 +0.6
352,313 + CSW01_01735 0.18 +0.8
352,318 + CSW01_01735 0.18 +0.2
352,348 - CSW01_01735 0.21 +0.5
352,363 + CSW01_01735 0.22 +1.4
352,363 + CSW01_01735 0.22 -0.4
352,395 + CSW01_01735 0.25 +0.1
352,395 + CSW01_01735 0.25 +1.5
352,403 - CSW01_01735 0.26 +0.8
352,403 - CSW01_01735 0.26 +1.8
352,423 + CSW01_01735 0.28 +0.9
352,423 + CSW01_01735 0.28 +1.0
352,441 - CSW01_01735 0.29 +0.1
352,455 + CSW01_01735 0.30 +0.4
352,474 + CSW01_01735 0.32 -0.1
352,503 + CSW01_01735 0.34 +1.6
352,511 - CSW01_01735 0.35 +0.8
352,551 - CSW01_01735 0.39 +0.8
352,551 - CSW01_01735 0.39 +1.1
352,653 - CSW01_01735 0.48 +1.5
352,665 + CSW01_01735 0.49 +1.4
352,679 - CSW01_01735 0.50 +1.0
352,700 + CSW01_01735 0.52 -0.2
352,709 + CSW01_01735 0.52 +0.5
352,717 - CSW01_01735 0.53 +0.3
352,721 + CSW01_01735 0.53 +0.1
352,771 - CSW01_01735 0.58 +0.6
352,803 + CSW01_01735 0.61 -0.1
352,811 - CSW01_01735 0.61 +1.4
352,857 - CSW01_01735 0.65 +1.3
352,889 - CSW01_01735 0.68 -0.1
352,927 - CSW01_01735 0.71 +0.1
352,948 + CSW01_01735 0.73 -0.9
352,958 + CSW01_01735 0.74 +1.8
353,042 + CSW01_01735 0.81 -0.6
353,184 + -0.1
353,271 - +0.8
353,302 + -0.2
353,302 + +0.5
353,309 + +0.5
353,310 - +0.3
353,310 - +1.5
353,310 - -1.1
353,310 - +0.8
353,402 - +0.4
353,409 - +1.6
353,422 + +0.8
353,422 + +0.6
353,422 + +1.0
353,422 + -0.5

Or see this region's nucleotide sequence