Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01470

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01460 and CSW01_01465 are separated by 221 nucleotidesCSW01_01465 and CSW01_01470 are separated by 12 nucleotidesCSW01_01470 and CSW01_01475 are separated by 153 nucleotidesCSW01_01475 and CSW01_01480 overlap by 4 nucleotides CSW01_01460: CSW01_01460 - TonB-dependent siderophore receptor, at 290,695 to 292,737 _01460 CSW01_01465: CSW01_01465 - ketohydroxyglutarate aldolase, at 292,959 to 293,564 _01465 CSW01_01470: CSW01_01470 - permease, at 293,577 to 294,953 _01470 CSW01_01475: CSW01_01475 - gluconate kinase, at 295,107 to 295,622 _01475 CSW01_01480: CSW01_01480 - phosphogluconate dehydratase, at 295,619 to 297,415 _01480 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 292.588 kb on - strandat 292.637 kb on - strandat 292.654 kb on + strandat 292.654 kb on + strandat 292.700 kb on + strandat 292.712 kb on + strandat 292.720 kb on - strandat 292.749 kb on - strandat 292.878 kb on - strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.964 kb on - strandat 292.987 kb on - strandat 293.007 kb on - strandat 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.119 kb on + strand, within CSW01_01465at 293.133 kb on - strand, within CSW01_01465at 293.187 kb on - strand, within CSW01_01465at 293.254 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.312 kb on + strand, within CSW01_01465at 293.318 kb on - strand, within CSW01_01465at 293.343 kb on - strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.352 kb on + strand, within CSW01_01465at 293.357 kb on + strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.381 kb on + strand, within CSW01_01465at 293.389 kb on - strand, within CSW01_01465at 293.389 kb on - strand, within CSW01_01465at 293.392 kb on + strand, within CSW01_01465at 293.400 kb on - strand, within CSW01_01465at 293.484 kb on - strand, within CSW01_01465at 293.552 kb on + strandat 293.552 kb on + strandat 293.560 kb on - strandat 293.560 kb on - strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on - strandat 293.574 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.582 kb on + strandat 293.590 kb on - strandat 293.590 kb on - strandat 293.590 kb on - strandat 293.630 kb on - strandat 293.729 kb on + strand, within CSW01_01470at 293.729 kb on + strand, within CSW01_01470at 293.734 kb on - strand, within CSW01_01470at 293.756 kb on + strand, within CSW01_01470at 293.781 kb on - strand, within CSW01_01470at 293.781 kb on - strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.791 kb on - strand, within CSW01_01470at 293.814 kb on - strand, within CSW01_01470at 293.815 kb on - strand, within CSW01_01470at 293.845 kb on + strand, within CSW01_01470at 293.869 kb on - strand, within CSW01_01470at 293.949 kb on - strand, within CSW01_01470at 293.973 kb on - strand, within CSW01_01470at 293.979 kb on + strand, within CSW01_01470at 293.992 kb on + strand, within CSW01_01470at 294.062 kb on - strand, within CSW01_01470at 294.062 kb on - strand, within CSW01_01470at 294.082 kb on - strand, within CSW01_01470at 294.092 kb on - strand, within CSW01_01470at 294.102 kb on - strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.123 kb on - strand, within CSW01_01470at 294.184 kb on - strand, within CSW01_01470at 294.220 kb on + strand, within CSW01_01470at 294.224 kb on + strand, within CSW01_01470at 294.234 kb on + strand, within CSW01_01470at 294.235 kb on + strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.352 kb on + strand, within CSW01_01470at 294.415 kb on + strand, within CSW01_01470at 294.420 kb on + strand, within CSW01_01470at 294.433 kb on - strand, within CSW01_01470at 294.458 kb on + strand, within CSW01_01470at 294.465 kb on + strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.468 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.507 kb on + strand, within CSW01_01470at 294.575 kb on + strand, within CSW01_01470at 294.610 kb on + strand, within CSW01_01470at 294.692 kb on - strand, within CSW01_01470at 294.724 kb on - strand, within CSW01_01470at 294.739 kb on + strand, within CSW01_01470at 294.817 kb on + strandat 294.934 kb on - strandat 294.968 kb on + strandat 295.099 kb on - strandat 295.136 kb on + strandat 295.221 kb on - strand, within CSW01_01475at 295.221 kb on - strand, within CSW01_01475at 295.245 kb on + strand, within CSW01_01475at 295.293 kb on - strand, within CSW01_01475at 295.347 kb on - strand, within CSW01_01475at 295.349 kb on - strand, within CSW01_01475at 295.426 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.484 kb on + strand, within CSW01_01475at 295.509 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.520 kb on + strand, within CSW01_01475at 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.580 kb on + strandat 295.583 kb on - strandat 295.605 kb on + strandat 295.615 kb on - strandat 295.641 kb on + strandat 295.663 kb on + strandat 295.709 kb on - strandat 295.726 kb on + strandat 295.734 kb on + strandat 295.751 kb on + strandat 295.751 kb on + strandat 295.759 kb on - strandat 295.818 kb on + strand, within CSW01_01480at 295.847 kb on + strand, within CSW01_01480at 295.860 kb on - strand, within CSW01_01480at 295.861 kb on + strand, within CSW01_01480at 295.874 kb on - strand, within CSW01_01480at 295.876 kb on + strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.909 kb on - strand, within CSW01_01480at 295.915 kb on + strand, within CSW01_01480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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292,588 - +0.4
292,637 - +0.3
292,654 + +1.0
292,654 + +0.7
292,700 + -0.2
292,712 + +0.3
292,720 - +0.4
292,749 - +0.2
292,878 - +0.5
292,956 + -1.2
292,956 + +0.0
292,956 + +0.9
292,956 + +0.4
292,964 - +0.1
292,987 - +0.7
293,007 - -0.8
293,105 + CSW01_01465 0.24 +0.8
293,105 + CSW01_01465 0.24 -0.4
293,105 + CSW01_01465 0.24 -0.2
293,105 + CSW01_01465 0.24 +0.2
293,113 - CSW01_01465 0.25 +3.8
293,113 - CSW01_01465 0.25 +0.9
293,113 - CSW01_01465 0.25 +0.0
293,113 - CSW01_01465 0.25 -0.2
293,113 - CSW01_01465 0.25 +0.7
293,113 - CSW01_01465 0.25 -1.6
293,119 + CSW01_01465 0.26 +0.3
293,133 - CSW01_01465 0.29 +0.2
293,187 - CSW01_01465 0.38 +0.0
293,254 + CSW01_01465 0.49 +1.3
293,289 + CSW01_01465 0.54 -0.7
293,289 + CSW01_01465 0.54 -0.2
293,289 + CSW01_01465 0.54 +0.1
293,297 - CSW01_01465 0.56 +0.7
293,297 - CSW01_01465 0.56 -1.1
293,297 - CSW01_01465 0.56 -0.4
293,312 + CSW01_01465 0.58 +0.5
293,318 - CSW01_01465 0.59 -1.0
293,343 - CSW01_01465 0.63 -0.3
293,350 + CSW01_01465 0.65 -0.1
293,350 + CSW01_01465 0.65 +0.5
293,350 + CSW01_01465 0.65 +0.2
293,350 + CSW01_01465 0.65 +0.1
293,350 + CSW01_01465 0.65 +0.4
293,350 + CSW01_01465 0.65 +0.3
293,350 + CSW01_01465 0.65 -1.0
293,350 + CSW01_01465 0.65 +0.2
293,350 + CSW01_01465 0.65 +0.2
293,350 + CSW01_01465 0.65 +0.1
293,352 + CSW01_01465 0.65 +0.2
293,357 + CSW01_01465 0.66 +0.6
293,358 - CSW01_01465 0.66 -0.1
293,358 - CSW01_01465 0.66 +0.2
293,358 - CSW01_01465 0.66 -1.9
293,358 - CSW01_01465 0.66 +0.4
293,381 + CSW01_01465 0.70 +0.4
293,389 - CSW01_01465 0.71 +0.1
293,389 - CSW01_01465 0.71 -0.4
293,392 + CSW01_01465 0.71 +0.1
293,400 - CSW01_01465 0.73 -0.2
293,484 - CSW01_01465 0.87 -1.8
293,552 + -0.0
293,552 + +0.3
293,560 - +1.4
293,560 - +0.4
293,567 + -0.0
293,567 + -0.0
293,567 + +0.3
293,567 + +0.9
293,567 + +0.7
293,567 - +0.4
293,574 - -0.2
293,575 - +0.8
293,575 - -0.2
293,575 - -0.1
293,575 - -1.6
293,575 - +0.8
293,575 - +1.1
293,575 - -1.2
293,582 + -0.7
293,590 - -0.2
293,590 - +0.7
293,590 - -0.0
293,630 - +0.4
293,729 + CSW01_01470 0.11 +2.5
293,729 + CSW01_01470 0.11 +0.5
293,734 - CSW01_01470 0.11 -0.2
293,756 + CSW01_01470 0.13 +0.3
293,781 - CSW01_01470 0.15 +0.6
293,781 - CSW01_01470 0.15 +0.8
293,783 + CSW01_01470 0.15 -0.2
293,783 + CSW01_01470 0.15 +0.3
293,783 + CSW01_01470 0.15 +1.2
293,791 - CSW01_01470 0.16 +0.0
293,814 - CSW01_01470 0.17 -0.4
293,815 - CSW01_01470 0.17 -0.0
293,845 + CSW01_01470 0.19 +0.5
293,869 - CSW01_01470 0.21 +0.0
293,949 - CSW01_01470 0.27 -0.0
293,973 - CSW01_01470 0.29 +0.2
293,979 + CSW01_01470 0.29 -0.1
293,992 + CSW01_01470 0.30 -0.4
294,062 - CSW01_01470 0.35 +1.2
294,062 - CSW01_01470 0.35 +0.1
294,082 - CSW01_01470 0.37 +0.1
294,092 - CSW01_01470 0.37 +0.6
294,102 - CSW01_01470 0.38 +1.2
294,115 + CSW01_01470 0.39 -0.2
294,115 + CSW01_01470 0.39 +0.6
294,115 + CSW01_01470 0.39 +0.9
294,123 - CSW01_01470 0.40 +1.2
294,184 - CSW01_01470 0.44 -0.1
294,220 + CSW01_01470 0.47 -0.5
294,224 + CSW01_01470 0.47 +1.0
294,234 + CSW01_01470 0.48 +0.3
294,235 + CSW01_01470 0.48 +1.2
294,242 - CSW01_01470 0.48 +0.9
294,242 - CSW01_01470 0.48 -0.0
294,242 - CSW01_01470 0.48 +0.1
294,242 - CSW01_01470 0.48 +1.0
294,243 - CSW01_01470 0.48 +0.4
294,243 - CSW01_01470 0.48 +1.1
294,260 + CSW01_01470 0.50 +1.2
294,260 + CSW01_01470 0.50 +0.1
294,268 - CSW01_01470 0.50 +0.7
294,268 - CSW01_01470 0.50 +0.4
294,352 + CSW01_01470 0.56 -1.6
294,415 + CSW01_01470 0.61 +0.1
294,420 + CSW01_01470 0.61 +0.0
294,433 - CSW01_01470 0.62 +0.0
294,458 + CSW01_01470 0.64 +0.0
294,465 + CSW01_01470 0.64 +0.6
294,466 - CSW01_01470 0.65 +0.0
294,466 - CSW01_01470 0.65 +2.6
294,466 - CSW01_01470 0.65 +0.6
294,466 - CSW01_01470 0.65 -0.9
294,466 - CSW01_01470 0.65 +0.8
294,468 + CSW01_01470 0.65 +0.2
294,490 + CSW01_01470 0.66 +0.2
294,490 + CSW01_01470 0.66 +0.3
294,507 + CSW01_01470 0.68 -1.2
294,575 + CSW01_01470 0.72 +0.0
294,610 + CSW01_01470 0.75 +0.6
294,692 - CSW01_01470 0.81 +0.1
294,724 - CSW01_01470 0.83 +0.5
294,739 + CSW01_01470 0.84 +0.2
294,817 + +0.1
294,934 - +0.1
294,968 + -0.1
295,099 - +0.7
295,136 + +0.2
295,221 - CSW01_01475 0.22 +0.9
295,221 - CSW01_01475 0.22 -0.4
295,245 + CSW01_01475 0.27 +0.8
295,293 - CSW01_01475 0.36 +0.5
295,347 - CSW01_01475 0.47 +0.3
295,349 - CSW01_01475 0.47 +0.5
295,426 + CSW01_01475 0.62 +1.1
295,461 + CSW01_01475 0.69 +1.8
295,461 + CSW01_01475 0.69 +0.8
295,469 - CSW01_01475 0.70 -0.2
295,469 - CSW01_01475 0.70 -0.9
295,484 + CSW01_01475 0.73 +0.3
295,509 + CSW01_01475 0.78 +0.6
295,510 + CSW01_01475 0.78 -1.2
295,510 + CSW01_01475 0.78 +0.6
295,510 - CSW01_01475 0.78 -0.6
295,518 - CSW01_01475 0.80 +2.1
295,518 - CSW01_01475 0.80 +0.4
295,520 + CSW01_01475 0.80 +0.7
295,575 + -0.1
295,575 + +0.3
295,575 + -0.4
295,575 + +1.0
295,575 + +0.3
295,575 + +0.6
295,580 + +0.2
295,583 - +0.2
295,605 + +0.2
295,615 - -1.6
295,641 + -0.6
295,663 + +0.4
295,709 - +0.3
295,726 + +2.0
295,734 + +0.9
295,751 + +1.1
295,751 + -0.4
295,759 - +0.7
295,818 + CSW01_01480 0.11 -0.2
295,847 + CSW01_01480 0.13 +0.2
295,860 - CSW01_01480 0.13 +1.5
295,861 + CSW01_01480 0.13 +1.0
295,874 - CSW01_01480 0.14 +0.5
295,876 + CSW01_01480 0.14 +0.9
295,879 - CSW01_01480 0.14 -0.0
295,879 - CSW01_01480 0.14 +0.1
295,881 + CSW01_01480 0.15 +0.1
295,881 + CSW01_01480 0.15 +0.5
295,881 + CSW01_01480 0.15 -0.9
295,881 + CSW01_01480 0.15 +0.8
295,881 + CSW01_01480 0.15 -0.3
295,881 + CSW01_01480 0.15 +0.3
295,881 + CSW01_01480 0.15 +0.9
295,884 - CSW01_01480 0.15 -0.4
295,884 - CSW01_01480 0.15 +0.4
295,889 - CSW01_01480 0.15 +0.2
295,889 - CSW01_01480 0.15 +0.7
295,889 - CSW01_01480 0.15 +0.4
295,889 - CSW01_01480 0.15 -0.2
295,889 - CSW01_01480 0.15 +1.5
295,889 - CSW01_01480 0.15 -0.9
295,889 - CSW01_01480 0.15 +1.1
295,889 - CSW01_01480 0.15 -0.0
295,909 - CSW01_01480 0.16 +1.0
295,915 + CSW01_01480 0.16 -0.4

Or see this region's nucleotide sequence