Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00480

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00475 and CSW01_00480 are separated by 105 nucleotidesCSW01_00480 and CSW01_00485 are separated by 70 nucleotidesCSW01_00485 and CSW01_00490 are separated by 27 nucleotides CSW01_00475: CSW01_00475 - cytochrome C biogenesis protein CcsA, at 86,575 to 87,576 _00475 CSW01_00480: CSW01_00480 - MATE family efflux transporter, at 87,682 to 89,046 _00480 CSW01_00485: CSW01_00485 - class I SAM-dependent methyltransferase, at 89,117 to 89,986 _00485 CSW01_00490: CSW01_00490 - repressor LexA, at 90,014 to 90,643 _00490 Position (kb) 87 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 86.753 kb on + strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.760 kb on - strand, within CSW01_00475at 86.761 kb on - strand, within CSW01_00475at 86.762 kb on + strand, within CSW01_00475at 86.804 kb on + strand, within CSW01_00475at 86.821 kb on + strand, within CSW01_00475at 86.829 kb on - strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.839 kb on + strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.847 kb on - strand, within CSW01_00475at 86.865 kb on + strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.897 kb on - strand, within CSW01_00475at 86.922 kb on - strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.978 kb on + strand, within CSW01_00475at 86.996 kb on - strand, within CSW01_00475at 87.162 kb on - strand, within CSW01_00475at 87.178 kb on - strand, within CSW01_00475at 87.206 kb on + strand, within CSW01_00475at 87.272 kb on - strand, within CSW01_00475at 87.276 kb on + strand, within CSW01_00475at 87.338 kb on + strand, within CSW01_00475at 87.346 kb on - strand, within CSW01_00475at 87.348 kb on + strand, within CSW01_00475at 87.465 kb on + strand, within CSW01_00475at 87.473 kb on - strand, within CSW01_00475at 87.473 kb on - strand, within CSW01_00475at 87.491 kb on + strandat 87.520 kb on - strandat 87.520 kb on - strandat 87.552 kb on + strandat 87.558 kb on + strandat 87.566 kb on - strandat 87.599 kb on - strandat 87.653 kb on - strandat 87.661 kb on - strandat 87.686 kb on + strandat 87.755 kb on - strandat 87.764 kb on + strandat 87.765 kb on + strandat 87.765 kb on + strandat 87.773 kb on - strandat 87.782 kb on + strandat 87.843 kb on - strand, within CSW01_00480at 87.892 kb on + strand, within CSW01_00480at 87.892 kb on + strand, within CSW01_00480at 87.902 kb on + strand, within CSW01_00480at 87.947 kb on + strand, within CSW01_00480at 87.991 kb on - strand, within CSW01_00480at 88.017 kb on + strand, within CSW01_00480at 88.054 kb on + strand, within CSW01_00480at 88.054 kb on + strand, within CSW01_00480at 88.110 kb on + strand, within CSW01_00480at 88.153 kb on + strand, within CSW01_00480at 88.195 kb on + strand, within CSW01_00480at 88.228 kb on + strand, within CSW01_00480at 88.266 kb on - strand, within CSW01_00480at 88.275 kb on + strand, within CSW01_00480at 88.277 kb on - strand, within CSW01_00480at 88.296 kb on - strand, within CSW01_00480at 88.328 kb on - strand, within CSW01_00480at 88.354 kb on + strand, within CSW01_00480at 88.399 kb on + strand, within CSW01_00480at 88.411 kb on + strand, within CSW01_00480at 88.419 kb on - strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.520 kb on - strand, within CSW01_00480at 88.576 kb on - strand, within CSW01_00480at 88.578 kb on + strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.607 kb on + strand, within CSW01_00480at 88.607 kb on + strand, within CSW01_00480at 88.642 kb on + strand, within CSW01_00480at 88.642 kb on + strand, within CSW01_00480at 88.687 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.739 kb on - strand, within CSW01_00480at 88.752 kb on - strand, within CSW01_00480at 88.787 kb on + strand, within CSW01_00480at 88.795 kb on - strand, within CSW01_00480at 88.809 kb on - strand, within CSW01_00480at 88.863 kb on - strand, within CSW01_00480at 88.863 kb on - strand, within CSW01_00480at 88.872 kb on + strand, within CSW01_00480at 88.880 kb on - strand, within CSW01_00480at 88.880 kb on - strand, within CSW01_00480at 88.891 kb on - strand, within CSW01_00480at 88.917 kb on + strandat 88.935 kb on - strandat 88.941 kb on + strandat 88.964 kb on + strandat 88.964 kb on + strandat 88.972 kb on - strandat 88.972 kb on - strandat 88.972 kb on - strandat 88.972 kb on - strandat 89.010 kb on + strandat 89.018 kb on - strandat 89.054 kb on - strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.152 kb on - strandat 89.283 kb on - strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.292 kb on - strand, within CSW01_00485at 89.305 kb on - strand, within CSW01_00485at 89.340 kb on + strand, within CSW01_00485at 89.348 kb on - strand, within CSW01_00485at 89.356 kb on + strand, within CSW01_00485at 89.547 kb on - strand, within CSW01_00485at 89.639 kb on + strand, within CSW01_00485at 89.639 kb on + strand, within CSW01_00485at 89.647 kb on - strand, within CSW01_00485at 89.647 kb on - strand, within CSW01_00485at 89.779 kb on - strand, within CSW01_00485at 89.779 kb on - strand, within CSW01_00485at 89.784 kb on + strand, within CSW01_00485at 89.817 kb on + strand, within CSW01_00485at 89.843 kb on + strand, within CSW01_00485at 89.844 kb on - strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.914 kb on + strandat 89.917 kb on - strandat 90.019 kb on + strandat 90.027 kb on - strandat 90.027 kb on - strandat 90.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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86,753 + CSW01_00475 0.18 +0.8
86,760 - CSW01_00475 0.18 +1.3
86,760 - CSW01_00475 0.18 +1.0
86,761 - CSW01_00475 0.19 -0.0
86,762 + CSW01_00475 0.19 -0.1
86,804 + CSW01_00475 0.23 +0.4
86,821 + CSW01_00475 0.25 +0.4
86,829 - CSW01_00475 0.25 +0.9
86,839 + CSW01_00475 0.26 +1.8
86,839 + CSW01_00475 0.26 -0.0
86,847 - CSW01_00475 0.27 -0.0
86,847 - CSW01_00475 0.27 +1.4
86,865 + CSW01_00475 0.29 +0.7
86,897 - CSW01_00475 0.32 +1.6
86,897 - CSW01_00475 0.32 +1.0
86,922 - CSW01_00475 0.35 +0.8
86,978 + CSW01_00475 0.40 +0.8
86,978 + CSW01_00475 0.40 +0.4
86,978 + CSW01_00475 0.40 +0.3
86,996 - CSW01_00475 0.42 +0.6
87,162 - CSW01_00475 0.59 +0.7
87,178 - CSW01_00475 0.60 +0.4
87,206 + CSW01_00475 0.63 -0.5
87,272 - CSW01_00475 0.70 +0.2
87,276 + CSW01_00475 0.70 -0.3
87,338 + CSW01_00475 0.76 +0.9
87,346 - CSW01_00475 0.77 -0.4
87,348 + CSW01_00475 0.77 -0.1
87,465 + CSW01_00475 0.89 +0.8
87,473 - CSW01_00475 0.90 -0.3
87,473 - CSW01_00475 0.90 -0.2
87,491 + +1.1
87,520 - +0.6
87,520 - +1.6
87,552 + -0.7
87,558 + +0.7
87,566 - +1.1
87,599 - +0.6
87,653 - +0.9
87,661 - +0.9
87,686 + +0.2
87,755 - +0.3
87,764 + +0.9
87,765 + -0.4
87,765 + +1.1
87,773 - -0.0
87,782 + -0.5
87,843 - CSW01_00480 0.12 +0.0
87,892 + CSW01_00480 0.15 +0.3
87,892 + CSW01_00480 0.15 +1.0
87,902 + CSW01_00480 0.16 +0.3
87,947 + CSW01_00480 0.19 +0.2
87,991 - CSW01_00480 0.23 -0.2
88,017 + CSW01_00480 0.25 +1.9
88,054 + CSW01_00480 0.27 -0.1
88,054 + CSW01_00480 0.27 +0.5
88,110 + CSW01_00480 0.31 +0.6
88,153 + CSW01_00480 0.35 -0.3
88,195 + CSW01_00480 0.38 +0.7
88,228 + CSW01_00480 0.40 +0.8
88,266 - CSW01_00480 0.43 +0.4
88,275 + CSW01_00480 0.43 +2.3
88,277 - CSW01_00480 0.44 -0.4
88,296 - CSW01_00480 0.45 +0.4
88,328 - CSW01_00480 0.47 +0.9
88,354 + CSW01_00480 0.49 -0.5
88,399 + CSW01_00480 0.53 +0.5
88,411 + CSW01_00480 0.53 +0.4
88,419 - CSW01_00480 0.54 -0.1
88,467 + CSW01_00480 0.58 +0.9
88,467 + CSW01_00480 0.58 -0.5
88,467 + CSW01_00480 0.58 +1.0
88,520 - CSW01_00480 0.61 +0.2
88,576 - CSW01_00480 0.65 -0.0
88,578 + CSW01_00480 0.66 +0.3
88,586 - CSW01_00480 0.66 +0.2
88,586 - CSW01_00480 0.66 -0.7
88,586 - CSW01_00480 0.66 -0.6
88,591 - CSW01_00480 0.67 +0.3
88,591 - CSW01_00480 0.67 -0.3
88,591 - CSW01_00480 0.67 +3.1
88,607 + CSW01_00480 0.68 +0.0
88,607 + CSW01_00480 0.68 +0.6
88,642 + CSW01_00480 0.70 -0.5
88,642 + CSW01_00480 0.70 -0.1
88,687 + CSW01_00480 0.74 +0.8
88,721 + CSW01_00480 0.76 +0.2
88,721 + CSW01_00480 0.76 +1.1
88,721 + CSW01_00480 0.76 +0.4
88,729 - CSW01_00480 0.77 +0.5
88,729 - CSW01_00480 0.77 +0.6
88,729 - CSW01_00480 0.77 +1.1
88,729 - CSW01_00480 0.77 +1.1
88,729 - CSW01_00480 0.77 +0.2
88,729 - CSW01_00480 0.77 -0.7
88,729 - CSW01_00480 0.77 -0.1
88,729 - CSW01_00480 0.77 -0.0
88,729 - CSW01_00480 0.77 -2.3
88,739 - CSW01_00480 0.77 -0.0
88,752 - CSW01_00480 0.78 +0.6
88,787 + CSW01_00480 0.81 +1.9
88,795 - CSW01_00480 0.82 +0.6
88,809 - CSW01_00480 0.83 +0.2
88,863 - CSW01_00480 0.87 +0.9
88,863 - CSW01_00480 0.87 +1.6
88,872 + CSW01_00480 0.87 +0.6
88,880 - CSW01_00480 0.88 -0.4
88,880 - CSW01_00480 0.88 +0.7
88,891 - CSW01_00480 0.89 +0.3
88,917 + -0.3
88,935 - -0.7
88,941 + +3.9
88,964 + +0.2
88,964 + +0.9
88,972 - +0.8
88,972 - -0.8
88,972 - +0.5
88,972 - -0.1
89,010 + +1.1
89,018 - +0.2
89,054 - +1.4
89,068 + -0.3
89,068 + +2.2
89,068 + +0.5
89,068 + -0.3
89,068 + +0.7
89,076 - -0.6
89,076 - +1.3
89,076 - -2.0
89,076 - -0.4
89,076 - +0.6
89,076 - +0.6
89,076 - +1.0
89,076 - -0.1
89,152 - -0.3
89,283 - CSW01_00485 0.19 +0.8
89,285 + CSW01_00485 0.19 +0.5
89,285 + CSW01_00485 0.19 +0.6
89,285 + CSW01_00485 0.19 +0.1
89,292 - CSW01_00485 0.20 +0.3
89,305 - CSW01_00485 0.22 -0.1
89,340 + CSW01_00485 0.26 -0.8
89,348 - CSW01_00485 0.27 +0.5
89,356 + CSW01_00485 0.27 +0.7
89,547 - CSW01_00485 0.49 -0.6
89,639 + CSW01_00485 0.60 +0.1
89,639 + CSW01_00485 0.60 +0.9
89,647 - CSW01_00485 0.61 -0.1
89,647 - CSW01_00485 0.61 +1.3
89,779 - CSW01_00485 0.76 +0.1
89,779 - CSW01_00485 0.76 +1.1
89,784 + CSW01_00485 0.77 +0.1
89,817 + CSW01_00485 0.80 +0.5
89,843 + CSW01_00485 0.83 +0.3
89,844 - CSW01_00485 0.84 +0.1
89,899 + CSW01_00485 0.90 +0.3
89,899 + CSW01_00485 0.90 +0.8
89,899 + CSW01_00485 0.90 +0.0
89,899 + CSW01_00485 0.90 +0.5
89,899 + CSW01_00485 0.90 +1.0
89,899 + CSW01_00485 0.90 -1.0
89,907 - +0.2
89,907 - +0.6
89,907 - +0.2
89,907 - +0.4
89,907 - +0.7
89,914 + -1.2
89,917 - -1.3
90,019 + -1.0
90,027 - +0.6
90,027 - +1.0
90,037 - -2.6

Or see this region's nucleotide sequence