Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00200

Experiment: LB_Anaerobic_18HR_ZN20A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00185 and CSW01_00190 overlap by 55 nucleotidesCSW01_00190 and CSW01_00195 are separated by 108 nucleotidesCSW01_00195 and CSW01_00200 are separated by 233 nucleotidesCSW01_00200 and CSW01_00205 are separated by 77 nucleotidesCSW01_00205 and CSW01_00210 are separated by 38 nucleotides CSW01_00185: CSW01_00185 - hypothetical protein, at 36,027 to 36,206 _00185 CSW01_00190: CSW01_00190 - DUF1040 domain-containing protein, at 36,152 to 36,418 _00190 CSW01_00195: CSW01_00195 - hypothetical protein, at 36,527 to 36,694 _00195 CSW01_00200: CSW01_00200 - sporulation control protein Spo0M, at 36,928 to 37,770 _00200 CSW01_00205: CSW01_00205 - hemolysin III family protein, at 37,848 to 38,495 _00205 CSW01_00210: CSW01_00210 - DUF3157 domain-containing protein, at 38,534 to 39,190 _00210 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 35.935 kb on - strandat 35.935 kb on - strandat 35.980 kb on + strandat 35.980 kb on + strandat 35.980 kb on + strandat 35.988 kb on - strandat 35.988 kb on - strandat 35.990 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 35.996 kb on + strandat 36.004 kb on - strandat 36.005 kb on - strandat 36.019 kb on - strandat 36.227 kb on - strand, within CSW01_00190at 36.245 kb on + strand, within CSW01_00190at 36.245 kb on + strand, within CSW01_00190at 36.261 kb on - strand, within CSW01_00190at 36.289 kb on - strand, within CSW01_00190at 36.306 kb on - strand, within CSW01_00190at 36.308 kb on - strand, within CSW01_00190at 36.343 kb on - strand, within CSW01_00190at 36.383 kb on - strand, within CSW01_00190at 36.383 kb on - strand, within CSW01_00190at 36.472 kb on + strandat 36.472 kb on + strandat 36.477 kb on + strandat 36.542 kb on - strandat 36.576 kb on + strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.659 kb on - strand, within CSW01_00195at 36.701 kb on + strandat 36.704 kb on - strandat 36.721 kb on - strandat 36.721 kb on - strandat 36.721 kb on - strandat 36.764 kb on + strandat 36.772 kb on - strandat 36.772 kb on - strandat 36.823 kb on + strandat 36.862 kb on - strandat 36.931 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.937 kb on + strandat 36.938 kb on + strandat 36.938 kb on + strandat 36.940 kb on - strandat 36.945 kb on - strandat 36.946 kb on - strandat 36.946 kb on - strandat 37.000 kb on - strandat 37.047 kb on - strand, within CSW01_00200at 37.056 kb on + strand, within CSW01_00200at 37.056 kb on + strand, within CSW01_00200at 37.064 kb on - strand, within CSW01_00200at 37.111 kb on - strand, within CSW01_00200at 37.218 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.219 kb on + strand, within CSW01_00200at 37.221 kb on - strand, within CSW01_00200at 37.227 kb on - strand, within CSW01_00200at 37.234 kb on - strand, within CSW01_00200at 37.305 kb on + strand, within CSW01_00200at 37.319 kb on - strand, within CSW01_00200at 37.319 kb on - strand, within CSW01_00200at 37.398 kb on + strand, within CSW01_00200at 37.398 kb on - strand, within CSW01_00200at 37.412 kb on + strand, within CSW01_00200at 37.459 kb on + strand, within CSW01_00200at 37.459 kb on + strand, within CSW01_00200at 37.476 kb on + strand, within CSW01_00200at 37.481 kb on + strand, within CSW01_00200at 37.484 kb on - strand, within CSW01_00200at 37.489 kb on - strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.492 kb on + strand, within CSW01_00200at 37.499 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.500 kb on - strand, within CSW01_00200at 37.552 kb on + strand, within CSW01_00200at 37.573 kb on - strand, within CSW01_00200at 37.596 kb on + strand, within CSW01_00200at 37.612 kb on - strand, within CSW01_00200at 37.616 kb on + strand, within CSW01_00200at 37.662 kb on - strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.683 kb on + strand, within CSW01_00200at 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.706 kb on - strandat 37.723 kb on - strandat 37.743 kb on - strandat 37.813 kb on - strandat 37.840 kb on + strandat 37.850 kb on - strandat 37.872 kb on - strandat 37.906 kb on + strandat 37.919 kb on - strand, within CSW01_00205at 37.933 kb on + strand, within CSW01_00205at 37.941 kb on - strand, within CSW01_00205at 37.949 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.043 kb on - strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.059 kb on - strand, within CSW01_00205at 38.064 kb on - strand, within CSW01_00205at 38.096 kb on + strand, within CSW01_00205at 38.097 kb on - strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.163 kb on + strand, within CSW01_00205at 38.171 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.184 kb on + strand, within CSW01_00205at 38.187 kb on + strand, within CSW01_00205at 38.192 kb on - strand, within CSW01_00205at 38.205 kb on - strand, within CSW01_00205at 38.215 kb on - strand, within CSW01_00205at 38.328 kb on - strand, within CSW01_00205at 38.335 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.431 kb on + strandat 38.431 kb on + strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.441 kb on + strandat 38.587 kb on - strandat 38.593 kb on + strandat 38.593 kb on + strandat 38.594 kb on + strandat 38.594 kb on + strandat 38.601 kb on - strand, within CSW01_00210at 38.602 kb on - strand, within CSW01_00210at 38.617 kb on + strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.642 kb on + strand, within CSW01_00210at 38.694 kb on - strand, within CSW01_00210

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20A
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35,935 - +1.2
35,935 - +0.2
35,980 + +0.3
35,980 + +0.2
35,980 + +0.1
35,988 - +0.1
35,988 - +0.4
35,990 + +0.4
35,996 + +0.7
35,996 + +0.7
35,996 + +0.9
35,996 + +0.4
36,004 - +0.7
36,005 - +0.3
36,019 - +0.8
36,227 - CSW01_00190 0.28 +1.1
36,245 + CSW01_00190 0.35 -1.8
36,245 + CSW01_00190 0.35 +0.7
36,261 - CSW01_00190 0.41 -0.6
36,289 - CSW01_00190 0.51 +1.2
36,306 - CSW01_00190 0.58 +0.5
36,308 - CSW01_00190 0.58 +0.4
36,343 - CSW01_00190 0.72 +0.1
36,383 - CSW01_00190 0.87 +1.7
36,383 - CSW01_00190 0.87 +0.2
36,472 + -0.0
36,472 + +0.8
36,477 + -0.9
36,542 - -0.9
36,576 + CSW01_00195 0.29 +0.9
36,659 - CSW01_00195 0.79 +0.3
36,659 - CSW01_00195 0.79 +0.0
36,659 - CSW01_00195 0.79 +0.4
36,701 + -0.1
36,704 - +0.6
36,721 - +0.1
36,721 - -0.4
36,721 - +1.5
36,764 + +0.7
36,772 - +0.4
36,772 - +0.4
36,823 + +1.1
36,862 - +0.2
36,931 + +0.0
36,937 + -0.5
36,937 + +0.1
36,937 + -0.6
36,937 + -0.4
36,937 + +0.9
36,937 + +0.3
36,938 + +0.2
36,938 + -0.3
36,940 - -0.2
36,945 - -0.3
36,946 - +0.9
36,946 - +0.8
37,000 - -0.4
37,047 - CSW01_00200 0.14 -0.1
37,056 + CSW01_00200 0.15 +0.5
37,056 + CSW01_00200 0.15 -1.0
37,064 - CSW01_00200 0.16 +0.4
37,111 - CSW01_00200 0.22 +0.8
37,218 + CSW01_00200 0.34 +0.2
37,219 + CSW01_00200 0.35 +0.2
37,219 + CSW01_00200 0.35 +0.5
37,219 + CSW01_00200 0.35 +0.1
37,221 - CSW01_00200 0.35 +0.5
37,227 - CSW01_00200 0.35 +0.1
37,234 - CSW01_00200 0.36 -0.5
37,305 + CSW01_00200 0.45 +1.5
37,319 - CSW01_00200 0.46 -0.6
37,319 - CSW01_00200 0.46 +0.5
37,398 + CSW01_00200 0.56 +0.8
37,398 - CSW01_00200 0.56 +0.2
37,412 + CSW01_00200 0.57 -0.2
37,459 + CSW01_00200 0.63 +1.1
37,459 + CSW01_00200 0.63 +0.4
37,476 + CSW01_00200 0.65 +0.6
37,481 + CSW01_00200 0.66 +0.2
37,484 - CSW01_00200 0.66 +0.0
37,489 - CSW01_00200 0.67 -0.3
37,492 + CSW01_00200 0.67 +0.2
37,492 + CSW01_00200 0.67 +0.5
37,492 + CSW01_00200 0.67 +0.1
37,492 + CSW01_00200 0.67 +0.9
37,499 - CSW01_00200 0.68 +0.4
37,500 - CSW01_00200 0.68 +1.3
37,500 - CSW01_00200 0.68 +1.3
37,500 - CSW01_00200 0.68 +0.5
37,500 - CSW01_00200 0.68 +1.7
37,500 - CSW01_00200 0.68 -0.1
37,500 - CSW01_00200 0.68 +1.0
37,500 - CSW01_00200 0.68 -0.1
37,500 - CSW01_00200 0.68 -0.1
37,552 + CSW01_00200 0.74 +1.3
37,573 - CSW01_00200 0.77 +1.0
37,596 + CSW01_00200 0.79 +0.1
37,612 - CSW01_00200 0.81 +0.9
37,616 + CSW01_00200 0.82 -0.1
37,662 - CSW01_00200 0.87 -1.2
37,664 + CSW01_00200 0.87 +0.2
37,664 + CSW01_00200 0.87 +0.6
37,683 + CSW01_00200 0.90 +0.2
37,698 + -0.3
37,698 + +0.8
37,698 + -1.0
37,698 + +0.7
37,698 + -0.5
37,706 - -0.2
37,723 - +0.7
37,743 - -0.1
37,813 - +1.3
37,840 + +0.6
37,850 - +0.0
37,872 - +0.2
37,906 + +0.2
37,919 - CSW01_00205 0.11 +0.1
37,933 + CSW01_00205 0.13 +2.1
37,941 - CSW01_00205 0.14 +1.0
37,949 + CSW01_00205 0.16 -0.0
38,035 + CSW01_00205 0.29 +0.1
38,035 + CSW01_00205 0.29 +1.2
38,043 - CSW01_00205 0.30 +0.2
38,045 + CSW01_00205 0.30 +1.9
38,045 + CSW01_00205 0.30 +0.2
38,045 + CSW01_00205 0.30 +0.5
38,045 + CSW01_00205 0.30 +0.4
38,045 + CSW01_00205 0.30 +0.0
38,045 + CSW01_00205 0.30 +0.8
38,045 + CSW01_00205 0.30 +0.5
38,045 + CSW01_00205 0.30 +0.2
38,045 + CSW01_00205 0.30 -0.3
38,045 + CSW01_00205 0.30 -3.5
38,053 - CSW01_00205 0.32 +0.3
38,053 - CSW01_00205 0.32 +1.9
38,053 - CSW01_00205 0.32 +1.7
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.4
38,053 - CSW01_00205 0.32 +0.2
38,053 - CSW01_00205 0.32 +0.4
38,053 - CSW01_00205 0.32 -1.1
38,053 - CSW01_00205 0.32 +0.4
38,053 - CSW01_00205 0.32 +0.2
38,059 - CSW01_00205 0.33 +0.9
38,064 - CSW01_00205 0.33 +0.2
38,096 + CSW01_00205 0.38 +0.4
38,097 - CSW01_00205 0.38 +1.0
38,128 + CSW01_00205 0.43 +0.4
38,128 + CSW01_00205 0.43 -0.1
38,128 + CSW01_00205 0.43 +0.9
38,128 + CSW01_00205 0.43 +0.3
38,128 + CSW01_00205 0.43 +0.7
38,136 - CSW01_00205 0.44 +0.4
38,136 - CSW01_00205 0.44 +1.3
38,136 - CSW01_00205 0.44 +0.5
38,136 - CSW01_00205 0.44 +0.4
38,136 - CSW01_00205 0.44 -0.3
38,163 + CSW01_00205 0.49 +0.6
38,171 - CSW01_00205 0.50 -1.0
38,183 - CSW01_00205 0.52 +0.2
38,183 - CSW01_00205 0.52 -1.0
38,184 + CSW01_00205 0.52 +0.1
38,187 + CSW01_00205 0.52 +0.1
38,192 - CSW01_00205 0.53 +0.6
38,205 - CSW01_00205 0.55 +2.1
38,215 - CSW01_00205 0.57 +0.2
38,328 - CSW01_00205 0.74 +0.6
38,335 + CSW01_00205 0.75 +0.5
38,358 + CSW01_00205 0.79 +1.3
38,358 + CSW01_00205 0.79 +0.5
38,431 + -0.4
38,431 + +1.1
38,439 - -0.0
38,439 - +0.5
38,441 + +0.9
38,587 - +0.7
38,593 + +1.0
38,593 + +0.5
38,594 + -0.2
38,594 + +0.5
38,601 - CSW01_00210 0.10 +0.4
38,602 - CSW01_00210 0.10 +1.2
38,617 + CSW01_00210 0.13 +1.2
38,625 - CSW01_00210 0.14 +0.4
38,625 - CSW01_00210 0.14 +0.8
38,625 - CSW01_00210 0.14 +0.9
38,625 - CSW01_00210 0.14 +0.7
38,625 - CSW01_00210 0.14 -0.5
38,642 + CSW01_00210 0.16 +0.4
38,694 - CSW01_00210 0.24 +0.7

Or see this region's nucleotide sequence