Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24850 and AO356_24855 are separated by 225 nucleotides AO356_24855 and AO356_24860 are separated by 168 nucleotides AO356_24860 and AO356_24865 are separated by 217 nucleotides AO356_24865 and AO356_24870 are separated by 3 nucleotides
AO356_24850: AO356_24850 - chemotaxis protein CheY, at 5,632,042 to 5,632,782
_24850
AO356_24855: AO356_24855 - hypothetical protein, at 5,633,008 to 5,633,271
_24855
AO356_24860: AO356_24860 - cytochrome C biogenesis protein, at 5,633,440 to 5,634,648
_24860
AO356_24865: AO356_24865 - Valyl-tRNA synthetase, at 5,634,866 to 5,635,195
_24865
AO356_24870: AO356_24870 - Fis family transcriptional regulator, at 5,635,199 to 5,637,064
_24870
Position (kb) 5633
5634
5635 Strain fitness (log2 ratio) -1
0
1
2
3 at 5632.475 kb on + strand, within AO356_24850 at 5632.476 kb on - strand, within AO356_24850 at 5632.715 kb on + strand at 5632.854 kb on + strand at 5632.864 kb on + strand at 5632.982 kb on - strand at 5633.104 kb on + strand, within AO356_24855 at 5633.105 kb on - strand, within AO356_24855 at 5633.105 kb on - strand, within AO356_24855 at 5633.105 kb on - strand, within AO356_24855 at 5633.105 kb on - strand, within AO356_24855 at 5633.105 kb on - strand, within AO356_24855 at 5633.110 kb on + strand, within AO356_24855 at 5633.110 kb on + strand, within AO356_24855 at 5633.338 kb on + strand at 5633.339 kb on - strand at 5633.410 kb on + strand at 5633.411 kb on - strand at 5633.411 kb on - strand at 5633.411 kb on - strand at 5633.424 kb on - strand at 5633.424 kb on - strand at 5633.424 kb on - strand at 5634.154 kb on + strand, within AO356_24860 at 5634.155 kb on - strand, within AO356_24860 at 5634.155 kb on - strand, within AO356_24860 at 5634.155 kb on - strand, within AO356_24860 at 5634.307 kb on + strand, within AO356_24860 at 5634.308 kb on - strand, within AO356_24860 at 5634.340 kb on + strand, within AO356_24860 at 5634.341 kb on - strand, within AO356_24860 at 5634.341 kb on - strand, within AO356_24860 at 5634.365 kb on - strand, within AO356_24860 at 5634.365 kb on - strand, within AO356_24860 at 5634.409 kb on + strand, within AO356_24860 at 5634.437 kb on + strand, within AO356_24860 at 5634.438 kb on - strand, within AO356_24860 at 5634.493 kb on + strand, within AO356_24860 at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.539 kb on - strand at 5634.654 kb on - strand at 5634.793 kb on + strand at 5634.794 kb on - strand at 5634.794 kb on - strand at 5634.794 kb on - strand at 5635.109 kb on + strand, within AO356_24865 at 5635.109 kb on + strand, within AO356_24865 at 5635.109 kb on + strand, within AO356_24865 at 5635.110 kb on - strand, within AO356_24865 at 5635.154 kb on + strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.157 kb on + strand, within AO356_24865 at 5635.158 kb on - strand, within AO356_24865 at 5635.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 5,632,475 + AO356_24850 0.58 +1.2 5,632,476 - AO356_24850 0.59 +0.6 5,632,715 + +0.7 5,632,854 + -0.4 5,632,864 + -0.4 5,632,982 - +0.5 5,633,104 + AO356_24855 0.36 +0.7 5,633,105 - AO356_24855 0.37 +0.8 5,633,105 - AO356_24855 0.37 +0.3 5,633,105 - AO356_24855 0.37 +0.4 5,633,105 - AO356_24855 0.37 -0.0 5,633,105 - AO356_24855 0.37 +0.5 5,633,110 + AO356_24855 0.39 +0.4 5,633,110 + AO356_24855 0.39 +0.1 5,633,338 + +0.2 5,633,339 - +0.4 5,633,410 + +0.2 5,633,411 - +0.1 5,633,411 - +0.3 5,633,411 - -0.2 5,633,424 - +1.1 5,633,424 - +0.3 5,633,424 - -0.2 5,634,154 + AO356_24860 0.59 -0.3 5,634,155 - AO356_24860 0.59 +0.9 5,634,155 - AO356_24860 0.59 -0.4 5,634,155 - AO356_24860 0.59 -0.9 5,634,307 + AO356_24860 0.72 -0.4 5,634,308 - AO356_24860 0.72 +0.4 5,634,340 + AO356_24860 0.74 -0.9 5,634,341 - AO356_24860 0.75 -0.1 5,634,341 - AO356_24860 0.75 +0.2 5,634,365 - AO356_24860 0.77 -0.5 5,634,365 - AO356_24860 0.77 +0.7 5,634,409 + AO356_24860 0.80 -0.1 5,634,437 + AO356_24860 0.82 +0.5 5,634,438 - AO356_24860 0.83 +0.6 5,634,493 + AO356_24860 0.87 -0.1 5,634,538 + +1.1 5,634,538 + +1.2 5,634,538 + -0.3 5,634,538 + -0.3 5,634,539 - +0.3 5,634,654 - +1.1 5,634,793 + +0.5 5,634,794 - +1.1 5,634,794 - +0.5 5,634,794 - -0.1 5,635,109 + AO356_24865 0.74 -0.9 5,635,109 + AO356_24865 0.74 -0.5 5,635,109 + AO356_24865 0.74 +0.4 5,635,110 - AO356_24865 0.74 +1.1 5,635,154 + AO356_24865 0.87 -0.1 5,635,155 - AO356_24865 0.88 -0.2 5,635,155 - AO356_24865 0.88 +0.9 5,635,155 - AO356_24865 0.88 +0.4 5,635,157 + AO356_24865 0.88 +0.2 5,635,158 - AO356_24865 0.88 -0.2 5,635,251 + +2.9
Or see this region's nucleotide sequence