Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23890 and AO356_23895 are separated by 257 nucleotides AO356_23895 and AO356_23900 are separated by 100 nucleotides
AO356_23890: AO356_23890 - universal stress protein, at 5,355,684 to 5,356,607
_23890
AO356_23895: AO356_23895 - hypothetical protein, at 5,356,865 to 5,358,115
_23895
AO356_23900: AO356_23900 - universal stress protein, at 5,358,216 to 5,359,127
_23900
Position (kb) 5356
5357
5358
5359 Strain fitness (log2 ratio) -1
0
1
2 at 5355.935 kb on - strand, within AO356_23890 at 5355.989 kb on - strand, within AO356_23890 at 5356.018 kb on + strand, within AO356_23890 at 5356.018 kb on + strand, within AO356_23890 at 5356.019 kb on - strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.499 kb on + strand, within AO356_23890 at 5356.500 kb on - strand, within AO356_23890 at 5356.602 kb on - strand at 5356.768 kb on - strand at 5357.091 kb on - strand, within AO356_23895 at 5357.091 kb on - strand, within AO356_23895 at 5357.206 kb on - strand, within AO356_23895 at 5357.354 kb on + strand, within AO356_23895 at 5357.682 kb on + strand, within AO356_23895 at 5357.682 kb on + strand, within AO356_23895 at 5357.683 kb on - strand, within AO356_23895 at 5357.683 kb on - strand, within AO356_23895 at 5357.683 kb on - strand, within AO356_23895 at 5357.690 kb on + strand, within AO356_23895 at 5357.690 kb on + strand, within AO356_23895 at 5357.690 kb on + strand, within AO356_23895 at 5357.690 kb on + strand, within AO356_23895 at 5358.242 kb on - strand at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.323 kb on + strand, within AO356_23900 at 5358.324 kb on - strand, within AO356_23900 at 5358.324 kb on - strand, within AO356_23900 at 5358.324 kb on - strand, within AO356_23900 at 5358.324 kb on - strand, within AO356_23900 at 5358.522 kb on + strand, within AO356_23900 at 5358.523 kb on - strand, within AO356_23900 at 5358.523 kb on - strand, within AO356_23900 at 5358.777 kb on - strand, within AO356_23900 at 5358.777 kb on - strand, within AO356_23900 at 5358.822 kb on + strand, within AO356_23900 at 5358.870 kb on + strand, within AO356_23900 at 5358.870 kb on + strand, within AO356_23900 at 5358.870 kb on + strand, within AO356_23900 at 5358.871 kb on - strand, within AO356_23900
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 5,355,935 - AO356_23890 0.27 -0.7 5,355,989 - AO356_23890 0.33 +0.4 5,356,018 + AO356_23890 0.36 +0.6 5,356,018 + AO356_23890 0.36 -0.4 5,356,019 - AO356_23890 0.36 +0.6 5,356,024 + AO356_23890 0.37 +0.4 5,356,024 + AO356_23890 0.37 +1.5 5,356,024 + AO356_23890 0.37 -0.0 5,356,024 + AO356_23890 0.37 +0.5 5,356,024 + AO356_23890 0.37 +1.0 5,356,024 + AO356_23890 0.37 +0.4 5,356,025 - AO356_23890 0.37 +0.4 5,356,025 - AO356_23890 0.37 +1.2 5,356,025 - AO356_23890 0.37 +0.8 5,356,025 - AO356_23890 0.37 -0.1 5,356,102 + AO356_23890 0.45 +0.2 5,356,102 + AO356_23890 0.45 -0.6 5,356,102 + AO356_23890 0.45 +0.4 5,356,103 - AO356_23890 0.45 +0.6 5,356,103 - AO356_23890 0.45 +0.1 5,356,103 - AO356_23890 0.45 +0.3 5,356,499 + AO356_23890 0.88 -0.4 5,356,500 - AO356_23890 0.88 -0.1 5,356,602 - +0.5 5,356,768 - +1.2 5,357,091 - AO356_23895 0.18 +1.0 5,357,091 - AO356_23895 0.18 -1.5 5,357,206 - AO356_23895 0.27 -1.2 5,357,354 + AO356_23895 0.39 +0.7 5,357,682 + AO356_23895 0.65 -1.5 5,357,682 + AO356_23895 0.65 +0.7 5,357,683 - AO356_23895 0.65 +0.0 5,357,683 - AO356_23895 0.65 +0.3 5,357,683 - AO356_23895 0.65 +0.1 5,357,690 + AO356_23895 0.66 +0.0 5,357,690 + AO356_23895 0.66 -1.2 5,357,690 + AO356_23895 0.66 -0.3 5,357,690 + AO356_23895 0.66 +0.2 5,358,242 - -1.0 5,358,323 + AO356_23900 0.12 -0.4 5,358,323 + AO356_23900 0.12 +0.8 5,358,323 + AO356_23900 0.12 +1.1 5,358,323 + AO356_23900 0.12 -0.1 5,358,323 + AO356_23900 0.12 -0.3 5,358,323 + AO356_23900 0.12 +0.7 5,358,323 + AO356_23900 0.12 -1.0 5,358,324 - AO356_23900 0.12 +1.2 5,358,324 - AO356_23900 0.12 +0.6 5,358,324 - AO356_23900 0.12 +0.1 5,358,324 - AO356_23900 0.12 +0.6 5,358,522 + AO356_23900 0.34 -0.9 5,358,523 - AO356_23900 0.34 +0.4 5,358,523 - AO356_23900 0.34 +0.5 5,358,777 - AO356_23900 0.62 -0.1 5,358,777 - AO356_23900 0.62 +0.1 5,358,822 + AO356_23900 0.66 -0.6 5,358,870 + AO356_23900 0.72 +0.5 5,358,870 + AO356_23900 0.72 +1.3 5,358,870 + AO356_23900 0.72 +1.9 5,358,871 - AO356_23900 0.72 +0.9
Or see this region's nucleotide sequence