Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22930 and AO356_22935 are separated by 251 nucleotides AO356_22935 and AO356_22940 are separated by 4 nucleotides AO356_22940 and AO356_22945 overlap by 1 nucleotides
AO356_22930: AO356_22930 - DNA alkylation repair protein, at 5,121,280 to 5,122,383
_22930
AO356_22935: AO356_22935 - hypothetical protein, at 5,122,635 to 5,122,943
_22935
AO356_22940: AO356_22940 - hypothetical protein, at 5,122,948 to 5,123,271
_22940
AO356_22945: AO356_22945 - peptidase M4, at 5,123,271 to 5,124,332
_22945
Position (kb) 5122
5123 Strain fitness (log2 ratio) -2
-1
0
1 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5122.040 kb on + strand, within AO356_22930 at 5122.041 kb on - strand, within AO356_22930 at 5122.083 kb on - strand, within AO356_22930 at 5122.094 kb on + strand, within AO356_22930 at 5122.173 kb on - strand, within AO356_22930 at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.416 kb on - strand at 5122.572 kb on - strand at 5122.635 kb on - strand at 5122.635 kb on - strand at 5122.792 kb on - strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.885 kb on - strand, within AO356_22935 at 5122.941 kb on + strand at 5122.942 kb on - strand at 5122.942 kb on - strand at 5122.942 kb on - strand at 5123.431 kb on + strand, within AO356_22945 at 5123.432 kb on - strand, within AO356_22945 at 5123.432 kb on - strand, within AO356_22945 at 5123.489 kb on - strand, within AO356_22945 at 5123.489 kb on - strand, within AO356_22945 at 5123.605 kb on + strand, within AO356_22945 at 5123.605 kb on + strand, within AO356_22945 at 5123.606 kb on - strand, within AO356_22945 at 5123.889 kb on + strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.924 kb on - strand, within AO356_22945
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 5,121,673 - AO356_22930 0.36 +0.1 5,121,673 - AO356_22930 0.36 +0.5 5,121,673 - AO356_22930 0.36 -0.3 5,121,803 + AO356_22930 0.47 +0.3 5,121,803 + AO356_22930 0.47 +1.1 5,121,803 + AO356_22930 0.47 -0.4 5,121,803 + AO356_22930 0.47 +1.3 5,121,804 - AO356_22930 0.47 -1.4 5,121,804 - AO356_22930 0.47 +0.8 5,122,040 + AO356_22930 0.69 +0.4 5,122,041 - AO356_22930 0.69 +0.1 5,122,083 - AO356_22930 0.73 -0.4 5,122,094 + AO356_22930 0.74 -1.4 5,122,173 - AO356_22930 0.81 +0.2 5,122,413 + -0.5 5,122,413 + -1.4 5,122,413 + -0.3 5,122,414 - -0.0 5,122,414 - -0.1 5,122,414 - +0.5 5,122,414 - +0.6 5,122,414 - -0.7 5,122,414 - +1.0 5,122,414 - +0.8 5,122,414 - -1.3 5,122,414 - -0.4 5,122,414 - -0.2 5,122,416 - -0.4 5,122,572 - -0.2 5,122,635 - -0.1 5,122,635 - -0.3 5,122,792 - AO356_22935 0.51 -1.5 5,122,884 + AO356_22935 0.81 -0.1 5,122,884 + AO356_22935 0.81 +0.1 5,122,884 + AO356_22935 0.81 -1.8 5,122,885 - AO356_22935 0.81 +0.3 5,122,941 + -0.4 5,122,942 - -0.3 5,122,942 - +0.4 5,122,942 - -0.8 5,123,431 + AO356_22945 0.15 +0.6 5,123,432 - AO356_22945 0.15 -0.4 5,123,432 - AO356_22945 0.15 +0.0 5,123,489 - AO356_22945 0.21 +0.0 5,123,489 - AO356_22945 0.21 +0.3 5,123,605 + AO356_22945 0.31 -0.3 5,123,605 + AO356_22945 0.31 +0.5 5,123,606 - AO356_22945 0.32 +0.2 5,123,889 + AO356_22945 0.58 +0.4 5,123,890 - AO356_22945 0.58 +1.1 5,123,890 - AO356_22945 0.58 -0.9 5,123,890 - AO356_22945 0.58 +0.1 5,123,924 - AO356_22945 0.61 +1.0
Or see this region's nucleotide sequence