Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22210 and AO356_22215 overlap by 4 nucleotides AO356_22215 and AO356_22220 overlap by 4 nucleotides AO356_22220 and AO356_22225 overlap by 1 nucleotides AO356_22225 and AO356_22230 overlap by 1 nucleotides
AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247
_22210
AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579
_22215
AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869
_22220
AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231
_22225
AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623
_22230
Position (kb) 4973
4974 Strain fitness (log2 ratio) -1
0
1 at 4972.364 kb on + strand, within AO356_22210 at 4972.365 kb on - strand, within AO356_22210 at 4972.493 kb on + strand, within AO356_22210 at 4972.842 kb on - strand, within AO356_22210 at 4972.842 kb on - strand, within AO356_22210 at 4972.926 kb on - strand, within AO356_22210
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 4,972,364 + AO356_22210 0.12 -1.1 4,972,365 - AO356_22210 0.12 -1.0 4,972,493 + AO356_22210 0.25 -0.3 4,972,842 - AO356_22210 0.59 +0.3 4,972,842 - AO356_22210 0.59 -0.6 4,972,926 - AO356_22210 0.68 -0.1
Or see this region's nucleotide sequence