Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20180

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20175 and AO356_20180 overlap by 1 nucleotidesAO356_20180 and AO356_20185 are separated by 3 nucleotides AO356_20175: AO356_20175 - 3-oxoacyl-ACP synthase, at 4,512,772 to 4,514,016 _20175 AO356_20180: AO356_20180 - 4-amino-4-deoxychorismate lyase, at 4,514,016 to 4,514,831 _20180 AO356_20185: AO356_20185 - aminodeoxychorismate lyase, at 4,514,835 to 4,515,995 _20185 Position (kb) 4514 4515Strain fitness (log2 ratio) -2 -1 0 1 2at 4514.224 kb on - strand, within AO356_20180at 4514.224 kb on - strand, within AO356_20180at 4514.491 kb on - strand, within AO356_20180at 4514.491 kb on - strand, within AO356_20180at 4514.629 kb on + strand, within AO356_20180at 4514.629 kb on + strand, within AO356_20180at 4514.720 kb on + strand, within AO356_20180at 4514.721 kb on - strand, within AO356_20180at 4514.721 kb on - strand, within AO356_20180at 4514.721 kb on - strand, within AO356_20180at 4514.724 kb on - strand, within AO356_20180at 4514.730 kb on + strand, within AO356_20180at 4514.731 kb on - strand, within AO356_20180at 4514.731 kb on - strand, within AO356_20180at 4514.843 kb on + strandat 4515.051 kb on + strand, within AO356_20185at 4515.051 kb on + strand, within AO356_20185at 4515.051 kb on + strand, within AO356_20185at 4515.051 kb on + strand, within AO356_20185at 4515.096 kb on + strand, within AO356_20185at 4515.101 kb on + strand, within AO356_20185at 4515.165 kb on + strand, within AO356_20185at 4515.347 kb on + strand, within AO356_20185at 4515.438 kb on + strand, within AO356_20185at 4515.450 kb on + strand, within AO356_20185at 4515.450 kb on + strand, within AO356_20185at 4515.600 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.747 kb on + strand, within AO356_20185at 4515.747 kb on + strand, within AO356_20185

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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4,514,224 - AO356_20180 0.25 +1.8
4,514,224 - AO356_20180 0.25 +0.5
4,514,491 - AO356_20180 0.58 +0.2
4,514,491 - AO356_20180 0.58 +0.6
4,514,629 + AO356_20180 0.75 +1.6
4,514,629 + AO356_20180 0.75 +0.2
4,514,720 + AO356_20180 0.86 +0.6
4,514,721 - AO356_20180 0.86 +1.4
4,514,721 - AO356_20180 0.86 -0.2
4,514,721 - AO356_20180 0.86 -0.4
4,514,724 - AO356_20180 0.87 +0.3
4,514,730 + AO356_20180 0.88 +0.9
4,514,731 - AO356_20180 0.88 -1.1
4,514,731 - AO356_20180 0.88 -0.0
4,514,843 + -0.7
4,515,051 + AO356_20185 0.19 +0.2
4,515,051 + AO356_20185 0.19 +0.7
4,515,051 + AO356_20185 0.19 -0.1
4,515,051 + AO356_20185 0.19 -0.2
4,515,096 + AO356_20185 0.22 -0.6
4,515,101 + AO356_20185 0.23 -0.0
4,515,165 + AO356_20185 0.28 -0.2
4,515,347 + AO356_20185 0.44 +0.4
4,515,438 + AO356_20185 0.52 +0.7
4,515,450 + AO356_20185 0.53 +1.2
4,515,450 + AO356_20185 0.53 +0.4
4,515,600 + AO356_20185 0.66 +0.2
4,515,645 + AO356_20185 0.70 -0.5
4,515,645 + AO356_20185 0.70 -1.1
4,515,645 + AO356_20185 0.70 -0.3
4,515,645 + AO356_20185 0.70 +0.8
4,515,645 + AO356_20185 0.70 -0.8
4,515,647 + AO356_20185 0.70 +1.0
4,515,647 + AO356_20185 0.70 +1.0
4,515,647 + AO356_20185 0.70 +0.2
4,515,647 + AO356_20185 0.70 -0.5
4,515,647 + AO356_20185 0.70 -1.2
4,515,654 + AO356_20185 0.71 +1.4
4,515,654 + AO356_20185 0.71 +0.3
4,515,654 + AO356_20185 0.71 -2.5
4,515,654 + AO356_20185 0.71 +1.0
4,515,747 + AO356_20185 0.79 -0.4
4,515,747 + AO356_20185 0.79 +0.3

Or see this region's nucleotide sequence